Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1484

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1483 and EX28DRAFT_1484 are separated by 42 nucleotidesEX28DRAFT_1484 and EX28DRAFT_1485 are separated by 72 nucleotidesEX28DRAFT_1485 and EX28DRAFT_1486 are separated by 101 nucleotides EX28DRAFT_1483: EX28DRAFT_1483 - Hydrolases of the alpha/beta superfamily, at 1,497,281 to 1,498,408 _1483 EX28DRAFT_1484: EX28DRAFT_1484 - Arabinose efflux permease, at 1,498,451 to 1,499,653 _1484 EX28DRAFT_1485: EX28DRAFT_1485 - Glutathione S-transferase, at 1,499,726 to 1,500,349 _1485 EX28DRAFT_1486: EX28DRAFT_1486 - Predicted membrane protein, at 1,500,451 to 1,501,242 _1486 Position (kb) 1498 1499 1500Strain fitness (log2 ratio) -2 -1 0 1 2at 1497.495 kb on - strand, within EX28DRAFT_1483at 1497.495 kb on - strand, within EX28DRAFT_1483at 1497.584 kb on + strand, within EX28DRAFT_1483at 1497.638 kb on + strand, within EX28DRAFT_1483at 1497.638 kb on + strand, within EX28DRAFT_1483at 1497.638 kb on + strand, within EX28DRAFT_1483at 1497.760 kb on + strand, within EX28DRAFT_1483at 1497.848 kb on + strand, within EX28DRAFT_1483at 1497.849 kb on - strand, within EX28DRAFT_1483at 1497.998 kb on + strand, within EX28DRAFT_1483at 1497.999 kb on - strand, within EX28DRAFT_1483at 1498.088 kb on + strand, within EX28DRAFT_1483at 1498.089 kb on - strand, within EX28DRAFT_1483at 1498.089 kb on - strand, within EX28DRAFT_1483at 1498.095 kb on - strand, within EX28DRAFT_1483at 1498.095 kb on - strand, within EX28DRAFT_1483at 1498.180 kb on + strand, within EX28DRAFT_1483at 1498.181 kb on - strand, within EX28DRAFT_1483at 1498.196 kb on + strand, within EX28DRAFT_1483at 1498.341 kb on - strandat 1498.407 kb on - strandat 1498.456 kb on + strandat 1498.456 kb on + strandat 1498.456 kb on + strandat 1498.456 kb on + strandat 1498.456 kb on + strandat 1498.457 kb on - strandat 1498.457 kb on - strandat 1498.457 kb on - strandat 1498.457 kb on - strandat 1498.536 kb on + strandat 1498.536 kb on + strandat 1498.537 kb on - strandat 1498.537 kb on - strandat 1498.537 kb on - strandat 1498.537 kb on - strandat 1498.561 kb on + strandat 1498.561 kb on + strandat 1498.693 kb on + strand, within EX28DRAFT_1484at 1498.693 kb on + strand, within EX28DRAFT_1484at 1498.772 kb on + strand, within EX28DRAFT_1484at 1498.772 kb on + strand, within EX28DRAFT_1484at 1498.773 kb on - strand, within EX28DRAFT_1484at 1498.773 kb on - strand, within EX28DRAFT_1484at 1498.782 kb on - strand, within EX28DRAFT_1484at 1498.782 kb on - strand, within EX28DRAFT_1484at 1498.813 kb on + strand, within EX28DRAFT_1484at 1498.814 kb on - strand, within EX28DRAFT_1484at 1498.816 kb on - strand, within EX28DRAFT_1484at 1498.816 kb on - strand, within EX28DRAFT_1484at 1498.946 kb on + strand, within EX28DRAFT_1484at 1499.054 kb on - strand, within EX28DRAFT_1484at 1499.089 kb on - strand, within EX28DRAFT_1484at 1499.161 kb on + strand, within EX28DRAFT_1484at 1499.165 kb on + strand, within EX28DRAFT_1484at 1499.166 kb on - strand, within EX28DRAFT_1484at 1499.485 kb on - strand, within EX28DRAFT_1484at 1499.509 kb on + strand, within EX28DRAFT_1484at 1499.541 kb on + strandat 1499.684 kb on - strandat 1500.037 kb on + strand, within EX28DRAFT_1485at 1500.037 kb on + strand, within EX28DRAFT_1485at 1500.038 kb on - strand, within EX28DRAFT_1485at 1500.076 kb on + strand, within EX28DRAFT_1485at 1500.121 kb on - strand, within EX28DRAFT_1485at 1500.121 kb on - strand, within EX28DRAFT_1485at 1500.259 kb on + strand, within EX28DRAFT_1485at 1500.334 kb on + strandat 1500.345 kb on + strandat 1500.345 kb on + strandat 1500.345 kb on + strandat 1500.346 kb on - strandat 1500.347 kb on + strandat 1500.347 kb on + strandat 1500.347 kb on + strandat 1500.347 kb on + strandat 1500.348 kb on - strandat 1500.348 kb on - strandat 1500.348 kb on - strandat 1500.389 kb on - strandat 1500.424 kb on + strandat 1500.428 kb on + strandat 1500.428 kb on + strandat 1500.475 kb on - strandat 1500.501 kb on - strandat 1500.501 kb on - strandat 1500.538 kb on - strand, within EX28DRAFT_1486

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,497,495 - EX28DRAFT_1483 0.19 -0.0
1,497,495 - EX28DRAFT_1483 0.19 -0.1
1,497,584 + EX28DRAFT_1483 0.27 +0.3
1,497,638 + EX28DRAFT_1483 0.32 +0.2
1,497,638 + EX28DRAFT_1483 0.32 -0.1
1,497,638 + EX28DRAFT_1483 0.32 +1.0
1,497,760 + EX28DRAFT_1483 0.42 +0.7
1,497,848 + EX28DRAFT_1483 0.50 -1.9
1,497,849 - EX28DRAFT_1483 0.50 -0.0
1,497,998 + EX28DRAFT_1483 0.64 -0.2
1,497,999 - EX28DRAFT_1483 0.64 -0.6
1,498,088 + EX28DRAFT_1483 0.72 +0.1
1,498,089 - EX28DRAFT_1483 0.72 +0.5
1,498,089 - EX28DRAFT_1483 0.72 -0.4
1,498,095 - EX28DRAFT_1483 0.72 -0.1
1,498,095 - EX28DRAFT_1483 0.72 +0.4
1,498,180 + EX28DRAFT_1483 0.80 -0.2
1,498,181 - EX28DRAFT_1483 0.80 +0.9
1,498,196 + EX28DRAFT_1483 0.81 -0.3
1,498,341 - -1.3
1,498,407 - +0.5
1,498,456 + -1.6
1,498,456 + +0.7
1,498,456 + -0.4
1,498,456 + +0.1
1,498,456 + +0.1
1,498,457 - -0.2
1,498,457 - -0.2
1,498,457 - -0.5
1,498,457 - -0.7
1,498,536 + -0.6
1,498,536 + +0.3
1,498,537 - -0.9
1,498,537 - -0.3
1,498,537 - +0.2
1,498,537 - +0.2
1,498,561 + +0.0
1,498,561 + -0.2
1,498,693 + EX28DRAFT_1484 0.20 +1.7
1,498,693 + EX28DRAFT_1484 0.20 +0.5
1,498,772 + EX28DRAFT_1484 0.27 +0.5
1,498,772 + EX28DRAFT_1484 0.27 +1.0
1,498,773 - EX28DRAFT_1484 0.27 -0.4
1,498,773 - EX28DRAFT_1484 0.27 +0.6
1,498,782 - EX28DRAFT_1484 0.28 -0.1
1,498,782 - EX28DRAFT_1484 0.28 +0.0
1,498,813 + EX28DRAFT_1484 0.30 +0.5
1,498,814 - EX28DRAFT_1484 0.30 +0.1
1,498,816 - EX28DRAFT_1484 0.30 -1.2
1,498,816 - EX28DRAFT_1484 0.30 +1.9
1,498,946 + EX28DRAFT_1484 0.41 +0.0
1,499,054 - EX28DRAFT_1484 0.50 +0.1
1,499,089 - EX28DRAFT_1484 0.53 -1.2
1,499,161 + EX28DRAFT_1484 0.59 -0.3
1,499,165 + EX28DRAFT_1484 0.59 +0.1
1,499,166 - EX28DRAFT_1484 0.59 -0.5
1,499,485 - EX28DRAFT_1484 0.86 +0.2
1,499,509 + EX28DRAFT_1484 0.88 +0.5
1,499,541 + +0.2
1,499,684 - +0.4
1,500,037 + EX28DRAFT_1485 0.50 -0.1
1,500,037 + EX28DRAFT_1485 0.50 -0.4
1,500,038 - EX28DRAFT_1485 0.50 +0.3
1,500,076 + EX28DRAFT_1485 0.56 -2.7
1,500,121 - EX28DRAFT_1485 0.63 -0.7
1,500,121 - EX28DRAFT_1485 0.63 -0.5
1,500,259 + EX28DRAFT_1485 0.85 +0.2
1,500,334 + +0.0
1,500,345 + -0.1
1,500,345 + -0.2
1,500,345 + -0.1
1,500,346 - -0.2
1,500,347 + +0.8
1,500,347 + -0.4
1,500,347 + -0.7
1,500,347 + +1.0
1,500,348 - +0.8
1,500,348 - +0.3
1,500,348 - -0.0
1,500,389 - -2.1
1,500,424 + +0.5
1,500,428 + -0.5
1,500,428 + +0.2
1,500,475 - -0.3
1,500,501 - +0.0
1,500,501 - -0.4
1,500,538 - EX28DRAFT_1486 0.11 +0.6

Or see this region's nucleotide sequence