Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides EX28DRAFT_1480 and EX28DRAFT_1481 are separated by 14 nucleotides EX28DRAFT_1481 and EX28DRAFT_1482 are separated by 170 nucleotides
EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767
_1479
EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467
_1480
EX28DRAFT_1481: EX28DRAFT_1481 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,495,482 to 1,496,111
_1481
EX28DRAFT_1482: EX28DRAFT_1482 - Transcriptional regulator, at 1,496,282 to 1,497,166
_1482
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.500 kb on + strand, within EX28DRAFT_1479 at 1494.505 kb on - strand, within EX28DRAFT_1479 at 1494.694 kb on + strand, within EX28DRAFT_1479 at 1494.815 kb on + strand at 1495.060 kb on + strand, within EX28DRAFT_1480 at 1495.106 kb on + strand, within EX28DRAFT_1480 at 1495.123 kb on - strand, within EX28DRAFT_1480 at 1495.198 kb on + strand, within EX28DRAFT_1480 at 1495.248 kb on + strand, within EX28DRAFT_1480 at 1495.345 kb on - strand, within EX28DRAFT_1480 at 1495.356 kb on + strand, within EX28DRAFT_1480 at 1495.448 kb on + strand at 1495.449 kb on - strand at 1495.452 kb on + strand at 1495.455 kb on + strand at 1495.461 kb on + strand at 1495.467 kb on + strand at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.698 kb on - strand, within EX28DRAFT_1481 at 1495.701 kb on + strand, within EX28DRAFT_1481 at 1495.727 kb on - strand, within EX28DRAFT_1481 at 1495.816 kb on + strand, within EX28DRAFT_1481 at 1495.817 kb on - strand, within EX28DRAFT_1481 at 1495.884 kb on + strand, within EX28DRAFT_1481 at 1495.885 kb on - strand, within EX28DRAFT_1481 at 1495.914 kb on + strand, within EX28DRAFT_1481 at 1496.085 kb on + strand at 1496.122 kb on - strand at 1496.139 kb on + strand at 1496.260 kb on - strand at 1496.349 kb on + strand at 1496.349 kb on + strand at 1496.439 kb on + strand, within EX28DRAFT_1482 at 1496.481 kb on + strand, within EX28DRAFT_1482 at 1496.481 kb on + strand, within EX28DRAFT_1482 at 1496.556 kb on + strand, within EX28DRAFT_1482 at 1496.603 kb on + strand, within EX28DRAFT_1482 at 1496.675 kb on - strand, within EX28DRAFT_1482 at 1496.687 kb on - strand, within EX28DRAFT_1482 at 1496.687 kb on - strand, within EX28DRAFT_1482 at 1496.690 kb on + strand, within EX28DRAFT_1482 at 1496.691 kb on - strand, within EX28DRAFT_1482 at 1496.872 kb on + strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.873 kb on - strand, within EX28DRAFT_1482 at 1496.877 kb on - strand, within EX28DRAFT_1482
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,494,499 - EX28DRAFT_1479 0.57 +0.2 1,494,499 - EX28DRAFT_1479 0.57 -2.3 1,494,500 + EX28DRAFT_1479 0.57 -0.5 1,494,505 - EX28DRAFT_1479 0.58 -0.1 1,494,694 + EX28DRAFT_1479 0.88 -0.6 1,494,815 + -0.1 1,495,060 + EX28DRAFT_1480 0.33 +0.2 1,495,106 + EX28DRAFT_1480 0.41 -0.3 1,495,123 - EX28DRAFT_1480 0.44 +1.0 1,495,198 + EX28DRAFT_1480 0.56 -0.2 1,495,248 + EX28DRAFT_1480 0.64 -0.3 1,495,345 - EX28DRAFT_1480 0.80 +0.1 1,495,356 + EX28DRAFT_1480 0.82 -1.0 1,495,448 + -1.5 1,495,449 - +0.2 1,495,452 + -0.4 1,495,455 + -1.1 1,495,461 + +0.6 1,495,467 + +1.2 1,495,622 - EX28DRAFT_1481 0.22 -0.0 1,495,622 - EX28DRAFT_1481 0.22 +0.8 1,495,698 - EX28DRAFT_1481 0.34 -0.0 1,495,701 + EX28DRAFT_1481 0.35 +2.5 1,495,727 - EX28DRAFT_1481 0.39 -0.3 1,495,816 + EX28DRAFT_1481 0.53 -1.8 1,495,817 - EX28DRAFT_1481 0.53 +0.4 1,495,884 + EX28DRAFT_1481 0.64 -0.4 1,495,885 - EX28DRAFT_1481 0.64 -0.2 1,495,914 + EX28DRAFT_1481 0.69 -2.8 1,496,085 + +0.0 1,496,122 - +0.1 1,496,139 + +0.1 1,496,260 - -1.7 1,496,349 + -0.2 1,496,349 + -0.5 1,496,439 + EX28DRAFT_1482 0.18 +1.2 1,496,481 + EX28DRAFT_1482 0.22 +0.2 1,496,481 + EX28DRAFT_1482 0.22 +0.5 1,496,556 + EX28DRAFT_1482 0.31 +0.7 1,496,603 + EX28DRAFT_1482 0.36 +0.6 1,496,675 - EX28DRAFT_1482 0.44 -0.9 1,496,687 - EX28DRAFT_1482 0.46 +0.4 1,496,687 - EX28DRAFT_1482 0.46 +0.7 1,496,690 + EX28DRAFT_1482 0.46 -0.3 1,496,691 - EX28DRAFT_1482 0.46 +1.0 1,496,872 + EX28DRAFT_1482 0.67 +0.4 1,496,873 - EX28DRAFT_1482 0.67 -1.0 1,496,873 - EX28DRAFT_1482 0.67 -0.1 1,496,873 - EX28DRAFT_1482 0.67 -0.6 1,496,873 - EX28DRAFT_1482 0.67 -0.5 1,496,873 - EX28DRAFT_1482 0.67 -0.4 1,496,873 - EX28DRAFT_1482 0.67 -0.9 1,496,877 - EX28DRAFT_1482 0.67 +0.5
Or see this region's nucleotide sequence