Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotides EX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides EX28DRAFT_1480 and EX28DRAFT_1481 are separated by 14 nucleotides
EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933
_1478
EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767
_1479
EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467
_1480
EX28DRAFT_1481: EX28DRAFT_1481 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,495,482 to 1,496,111
_1481
Position (kb)
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1493.159 kb on - strand at 1493.679 kb on - strand, within EX28DRAFT_1478 at 1493.730 kb on - strand, within EX28DRAFT_1478 at 1493.748 kb on - strand, within EX28DRAFT_1478 at 1493.907 kb on - strand at 1493.909 kb on + strand at 1493.910 kb on - strand at 1493.931 kb on + strand at 1494.014 kb on - strand at 1494.306 kb on + strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.500 kb on + strand, within EX28DRAFT_1479 at 1494.505 kb on - strand, within EX28DRAFT_1479 at 1494.694 kb on + strand, within EX28DRAFT_1479 at 1494.815 kb on + strand at 1495.060 kb on + strand, within EX28DRAFT_1480 at 1495.106 kb on + strand, within EX28DRAFT_1480 at 1495.123 kb on - strand, within EX28DRAFT_1480 at 1495.198 kb on + strand, within EX28DRAFT_1480 at 1495.248 kb on + strand, within EX28DRAFT_1480 at 1495.345 kb on - strand, within EX28DRAFT_1480 at 1495.356 kb on + strand, within EX28DRAFT_1480 at 1495.448 kb on + strand at 1495.449 kb on - strand at 1495.452 kb on + strand at 1495.455 kb on + strand at 1495.461 kb on + strand at 1495.467 kb on + strand at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.698 kb on - strand, within EX28DRAFT_1481 at 1495.701 kb on + strand, within EX28DRAFT_1481 at 1495.727 kb on - strand, within EX28DRAFT_1481
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,493,159 - -2.3 1,493,679 - EX28DRAFT_1478 0.53 +0.1 1,493,730 - EX28DRAFT_1478 0.63 -0.5 1,493,748 - EX28DRAFT_1478 0.66 -1.2 1,493,907 - -0.3 1,493,909 + -0.6 1,493,910 - -0.3 1,493,931 + -0.5 1,494,014 - -0.0 1,494,306 + EX28DRAFT_1479 0.26 +0.1 1,494,499 - EX28DRAFT_1479 0.57 +0.2 1,494,499 - EX28DRAFT_1479 0.57 -2.3 1,494,500 + EX28DRAFT_1479 0.57 -0.5 1,494,505 - EX28DRAFT_1479 0.58 -0.1 1,494,694 + EX28DRAFT_1479 0.88 -0.6 1,494,815 + -0.1 1,495,060 + EX28DRAFT_1480 0.33 +0.2 1,495,106 + EX28DRAFT_1480 0.41 -0.3 1,495,123 - EX28DRAFT_1480 0.44 +1.0 1,495,198 + EX28DRAFT_1480 0.56 -0.2 1,495,248 + EX28DRAFT_1480 0.64 -0.3 1,495,345 - EX28DRAFT_1480 0.80 +0.1 1,495,356 + EX28DRAFT_1480 0.82 -1.0 1,495,448 + -1.5 1,495,449 - +0.2 1,495,452 + -0.4 1,495,455 + -1.1 1,495,461 + +0.6 1,495,467 + +1.2 1,495,622 - EX28DRAFT_1481 0.22 -0.0 1,495,622 - EX28DRAFT_1481 0.22 +0.8 1,495,698 - EX28DRAFT_1481 0.34 -0.0 1,495,701 + EX28DRAFT_1481 0.35 +2.5 1,495,727 - EX28DRAFT_1481 0.39 -0.3
Or see this region's nucleotide sequence