Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1449 and EX28DRAFT_1450 are separated by 142 nucleotides EX28DRAFT_1450 and EX28DRAFT_1451 are separated by 91 nucleotides EX28DRAFT_1451 and EX28DRAFT_1452 are separated by 33 nucleotides EX28DRAFT_1452 and EX28DRAFT_1453 are separated by 286 nucleotides EX28DRAFT_1453 and EX28DRAFT_1454 are separated by 43 nucleotides
EX28DRAFT_1449: EX28DRAFT_1449 - Zn-dependent oligopeptidases, at 1,462,300 to 1,464,333
_1449
EX28DRAFT_1450: EX28DRAFT_1450 - Short-chain alcohol dehydrogenase of unknown specificity, at 1,464,476 to 1,465,222
_1450
EX28DRAFT_1451: EX28DRAFT_1451 - Transcriptional regulators, at 1,465,314 to 1,466,000
_1451
EX28DRAFT_1452: EX28DRAFT_1452 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,466,034 to 1,466,465
_1452
EX28DRAFT_1453: EX28DRAFT_1453 - putative selenium-binding protein YdfZ, at 1,466,752 to 1,466,955
_1453
EX28DRAFT_1454: EX28DRAFT_1454 - Mannitol-1-phosphate/altronate dehydrogenases, at 1,466,999 to 1,468,462
_1454
Position (kb)
1465
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1464.368 kb on - strand at 1464.437 kb on + strand at 1464.445 kb on + strand at 1464.556 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.809 kb on + strand, within EX28DRAFT_1450 at 1464.810 kb on - strand, within EX28DRAFT_1450 at 1464.810 kb on - strand, within EX28DRAFT_1450 at 1464.811 kb on + strand, within EX28DRAFT_1450 at 1464.868 kb on + strand, within EX28DRAFT_1450 at 1464.914 kb on + strand, within EX28DRAFT_1450 at 1464.961 kb on + strand, within EX28DRAFT_1450 at 1465.162 kb on + strand at 1465.162 kb on + strand at 1465.162 kb on + strand at 1465.221 kb on - strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.276 kb on + strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.385 kb on + strand, within EX28DRAFT_1451 at 1465.481 kb on + strand, within EX28DRAFT_1451 at 1465.485 kb on - strand, within EX28DRAFT_1451 at 1465.533 kb on + strand, within EX28DRAFT_1451 at 1465.547 kb on - strand, within EX28DRAFT_1451 at 1465.625 kb on + strand, within EX28DRAFT_1451 at 1465.626 kb on - strand, within EX28DRAFT_1451 at 1465.644 kb on + strand, within EX28DRAFT_1451 at 1465.645 kb on - strand, within EX28DRAFT_1451 at 1465.692 kb on - strand, within EX28DRAFT_1451 at 1465.815 kb on + strand, within EX28DRAFT_1451 at 1465.816 kb on - strand, within EX28DRAFT_1451 at 1465.871 kb on + strand, within EX28DRAFT_1451 at 1465.976 kb on + strand at 1465.998 kb on + strand at 1465.998 kb on + strand at 1465.999 kb on - strand at 1466.001 kb on + strand at 1466.172 kb on - strand, within EX28DRAFT_1452 at 1466.280 kb on - strand, within EX28DRAFT_1452 at 1466.280 kb on - strand, within EX28DRAFT_1452 at 1466.280 kb on - strand, within EX28DRAFT_1452 at 1466.280 kb on - strand, within EX28DRAFT_1452 at 1466.281 kb on + strand, within EX28DRAFT_1452 at 1466.281 kb on + strand, within EX28DRAFT_1452 at 1466.281 kb on + strand, within EX28DRAFT_1452 at 1466.282 kb on - strand, within EX28DRAFT_1452 at 1466.282 kb on - strand, within EX28DRAFT_1452 at 1466.282 kb on - strand, within EX28DRAFT_1452 at 1466.297 kb on + strand, within EX28DRAFT_1452 at 1466.459 kb on + strand at 1466.460 kb on - strand at 1466.460 kb on - strand at 1466.460 kb on - strand at 1466.462 kb on - strand at 1466.462 kb on - strand at 1466.465 kb on + strand at 1466.466 kb on - strand at 1466.466 kb on - strand at 1466.528 kb on - strand at 1466.596 kb on - strand at 1466.681 kb on + strand at 1466.681 kb on + strand at 1466.685 kb on + strand at 1466.685 kb on + strand at 1466.686 kb on - strand at 1466.686 kb on - strand at 1466.686 kb on - strand at 1466.687 kb on + strand at 1466.688 kb on - strand at 1466.746 kb on + strand at 1466.746 kb on + strand at 1466.748 kb on + strand at 1466.749 kb on - strand at 1466.836 kb on - strand, within EX28DRAFT_1453 at 1466.914 kb on - strand, within EX28DRAFT_1453 at 1466.914 kb on - strand, within EX28DRAFT_1453 at 1466.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,464,368 - +0.1 1,464,437 + -0.1 1,464,445 + -3.0 1,464,556 + EX28DRAFT_1450 0.11 +0.0 1,464,809 + EX28DRAFT_1450 0.45 -1.4 1,464,809 + EX28DRAFT_1450 0.45 +0.2 1,464,809 + EX28DRAFT_1450 0.45 +0.9 1,464,809 + EX28DRAFT_1450 0.45 -0.6 1,464,810 - EX28DRAFT_1450 0.45 -0.2 1,464,810 - EX28DRAFT_1450 0.45 +0.3 1,464,811 + EX28DRAFT_1450 0.45 -0.1 1,464,868 + EX28DRAFT_1450 0.52 +0.0 1,464,914 + EX28DRAFT_1450 0.59 -0.5 1,464,961 + EX28DRAFT_1450 0.65 -0.1 1,465,162 + +0.5 1,465,162 + +0.4 1,465,162 + -0.1 1,465,221 - -0.1 1,465,276 + -0.2 1,465,276 + -0.9 1,465,276 + +0.2 1,465,276 + -0.2 1,465,277 - -1.4 1,465,277 - -0.0 1,465,385 + EX28DRAFT_1451 0.10 -0.8 1,465,481 + EX28DRAFT_1451 0.24 -1.2 1,465,485 - EX28DRAFT_1451 0.25 -0.2 1,465,533 + EX28DRAFT_1451 0.32 -0.8 1,465,547 - EX28DRAFT_1451 0.34 -0.8 1,465,625 + EX28DRAFT_1451 0.45 +0.1 1,465,626 - EX28DRAFT_1451 0.45 -0.4 1,465,644 + EX28DRAFT_1451 0.48 -0.6 1,465,645 - EX28DRAFT_1451 0.48 -0.0 1,465,692 - EX28DRAFT_1451 0.55 +1.3 1,465,815 + EX28DRAFT_1451 0.73 -0.4 1,465,816 - EX28DRAFT_1451 0.73 -0.3 1,465,871 + EX28DRAFT_1451 0.81 -0.2 1,465,976 + -0.8 1,465,998 + +0.2 1,465,998 + +0.4 1,465,999 - -0.0 1,466,001 + -0.2 1,466,172 - EX28DRAFT_1452 0.32 +0.3 1,466,280 - EX28DRAFT_1452 0.57 -0.4 1,466,280 - EX28DRAFT_1452 0.57 +0.1 1,466,280 - EX28DRAFT_1452 0.57 +0.8 1,466,280 - EX28DRAFT_1452 0.57 -0.5 1,466,281 + EX28DRAFT_1452 0.57 +0.9 1,466,281 + EX28DRAFT_1452 0.57 -0.1 1,466,281 + EX28DRAFT_1452 0.57 -0.0 1,466,282 - EX28DRAFT_1452 0.57 -0.4 1,466,282 - EX28DRAFT_1452 0.57 -0.2 1,466,282 - EX28DRAFT_1452 0.57 -0.4 1,466,297 + EX28DRAFT_1452 0.61 -1.0 1,466,459 + +0.2 1,466,460 - -0.6 1,466,460 - +0.2 1,466,460 - -2.6 1,466,462 - +0.2 1,466,462 - -0.6 1,466,465 + -1.4 1,466,466 - +0.2 1,466,466 - +2.0 1,466,528 - -0.8 1,466,596 - +0.2 1,466,681 + -0.1 1,466,681 + -1.5 1,466,685 + +1.2 1,466,685 + +0.3 1,466,686 - +0.4 1,466,686 - +1.9 1,466,686 - -1.3 1,466,687 + -0.5 1,466,688 - -0.7 1,466,746 + -0.0 1,466,746 + -0.1 1,466,748 + -2.5 1,466,749 - -1.3 1,466,836 - EX28DRAFT_1453 0.41 -0.4 1,466,914 - EX28DRAFT_1453 0.79 +0.3 1,466,914 - EX28DRAFT_1453 0.79 -0.1 1,466,954 - +0.3
Or see this region's nucleotide sequence