Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1442

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1441 and EX28DRAFT_1442 are separated by 378 nucleotidesEX28DRAFT_1442 and EX28DRAFT_1443 are separated by 5 nucleotidesEX28DRAFT_1443 and EX28DRAFT_1444 are separated by 5 nucleotides EX28DRAFT_1441: EX28DRAFT_1441 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,451,291 to 1,453,873 _1441 EX28DRAFT_1442: EX28DRAFT_1442 - DNA-binding HTH domain-containing proteins, at 1,454,252 to 1,454,887 _1442 EX28DRAFT_1443: EX28DRAFT_1443 - hypothetical protein, at 1,454,893 to 1,455,576 _1443 EX28DRAFT_1444: EX28DRAFT_1444 - hypothetical protein, at 1,455,582 to 1,457,195 _1444 Position (kb) 1454 1455Strain fitness (log2 ratio) -1 0 1 2at 1453.265 kb on + strand, within EX28DRAFT_1441at 1453.266 kb on - strand, within EX28DRAFT_1441at 1453.267 kb on + strand, within EX28DRAFT_1441at 1453.418 kb on + strand, within EX28DRAFT_1441at 1453.548 kb on + strand, within EX28DRAFT_1441at 1453.558 kb on + strand, within EX28DRAFT_1441at 1453.611 kb on + strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.795 kb on + strandat 1453.886 kb on + strandat 1454.381 kb on + strand, within EX28DRAFT_1442at 1454.538 kb on + strand, within EX28DRAFT_1442at 1454.768 kb on - strand, within EX28DRAFT_1442at 1454.769 kb on + strand, within EX28DRAFT_1442at 1454.769 kb on + strand, within EX28DRAFT_1442at 1454.870 kb on - strandat 1454.873 kb on + strandat 1454.873 kb on + strandat 1454.873 kb on + strandat 1454.878 kb on + strandat 1454.878 kb on + strandat 1454.878 kb on + strandat 1454.945 kb on - strandat 1455.013 kb on - strand, within EX28DRAFT_1443at 1455.069 kb on + strand, within EX28DRAFT_1443at 1455.254 kb on + strand, within EX28DRAFT_1443at 1455.428 kb on - strand, within EX28DRAFT_1443at 1455.495 kb on - strand, within EX28DRAFT_1443at 1455.498 kb on + strand, within EX28DRAFT_1443at 1455.548 kb on - strandat 1455.566 kb on + strandat 1455.576 kb on + strandat 1455.579 kb on + strandat 1455.881 kb on + strand, within EX28DRAFT_1444at 1455.882 kb on - strand, within EX28DRAFT_1444at 1455.882 kb on - strand, within EX28DRAFT_1444

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,453,265 + EX28DRAFT_1441 0.76 -0.4
1,453,266 - EX28DRAFT_1441 0.76 +1.1
1,453,267 + EX28DRAFT_1441 0.77 -0.8
1,453,418 + EX28DRAFT_1441 0.82 -0.5
1,453,548 + EX28DRAFT_1441 0.87 -0.5
1,453,558 + EX28DRAFT_1441 0.88 -0.1
1,453,611 + EX28DRAFT_1441 0.90 -1.2
1,453,612 - EX28DRAFT_1441 0.90 +0.0
1,453,612 - EX28DRAFT_1441 0.90 -0.1
1,453,612 - EX28DRAFT_1441 0.90 -0.2
1,453,612 - EX28DRAFT_1441 0.90 -0.0
1,453,795 + -0.8
1,453,886 + +0.2
1,454,381 + EX28DRAFT_1442 0.20 -0.0
1,454,538 + EX28DRAFT_1442 0.45 +0.5
1,454,768 - EX28DRAFT_1442 0.81 +1.2
1,454,769 + EX28DRAFT_1442 0.81 +0.1
1,454,769 + EX28DRAFT_1442 0.81 +2.1
1,454,870 - +0.0
1,454,873 + -0.1
1,454,873 + -1.4
1,454,873 + -0.4
1,454,878 + -0.6
1,454,878 + -1.2
1,454,878 + +0.3
1,454,945 - +0.9
1,455,013 - EX28DRAFT_1443 0.18 +1.7
1,455,069 + EX28DRAFT_1443 0.26 +0.1
1,455,254 + EX28DRAFT_1443 0.53 +0.0
1,455,428 - EX28DRAFT_1443 0.78 +0.5
1,455,495 - EX28DRAFT_1443 0.88 -0.9
1,455,498 + EX28DRAFT_1443 0.88 -1.0
1,455,548 - +0.5
1,455,566 + -0.9
1,455,576 + +1.8
1,455,579 + -0.1
1,455,881 + EX28DRAFT_1444 0.19 +0.1
1,455,882 - EX28DRAFT_1444 0.19 +0.8
1,455,882 - EX28DRAFT_1444 0.19 -0.7

Or see this region's nucleotide sequence