Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1437

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1436 and EX28DRAFT_1437 are separated by 457 nucleotidesEX28DRAFT_1437 and EX28DRAFT_1438 are separated by 72 nucleotidesEX28DRAFT_1438 and EX28DRAFT_1439 are separated by 67 nucleotides EX28DRAFT_1436: EX28DRAFT_1436 - Major Facilitator Superfamily, at 1,447,406 to 1,448,614 _1436 EX28DRAFT_1437: EX28DRAFT_1437 - Uncharacterized membrane protein, at 1,449,072 to 1,449,743 _1437 EX28DRAFT_1438: EX28DRAFT_1438 - Transcriptional regulators, at 1,449,816 to 1,450,271 _1438 EX28DRAFT_1439: EX28DRAFT_1439 - Uncharacterized conserved protein, at 1,450,339 to 1,450,629 _1439 Position (kb) 1449 1450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1448.547 kb on - strandat 1448.547 kb on - strandat 1448.547 kb on - strandat 1448.614 kb on + strandat 1448.614 kb on + strandat 1448.614 kb on + strandat 1448.615 kb on - strandat 1448.615 kb on - strandat 1448.617 kb on + strandat 1448.658 kb on - strandat 1448.660 kb on + strandat 1448.770 kb on + strandat 1448.836 kb on - strandat 1448.891 kb on - strandat 1448.900 kb on + strandat 1448.913 kb on + strandat 1448.993 kb on + strandat 1449.000 kb on + strandat 1449.000 kb on + strandat 1449.043 kb on - strandat 1449.046 kb on + strandat 1449.082 kb on - strandat 1449.083 kb on + strandat 1449.083 kb on + strandat 1449.122 kb on + strandat 1449.153 kb on - strand, within EX28DRAFT_1437at 1449.412 kb on + strand, within EX28DRAFT_1437at 1449.434 kb on - strand, within EX28DRAFT_1437at 1449.499 kb on - strand, within EX28DRAFT_1437at 1449.556 kb on + strand, within EX28DRAFT_1437at 1449.556 kb on + strand, within EX28DRAFT_1437at 1449.598 kb on - strand, within EX28DRAFT_1437at 1449.605 kb on + strand, within EX28DRAFT_1437at 1449.742 kb on - strandat 1449.813 kb on + strandat 1449.836 kb on + strandat 1450.174 kb on + strand, within EX28DRAFT_1438at 1450.174 kb on + strand, within EX28DRAFT_1438at 1450.175 kb on - strand, within EX28DRAFT_1438at 1450.175 kb on - strand, within EX28DRAFT_1438at 1450.293 kb on - strandat 1450.306 kb on + strandat 1450.364 kb on + strandat 1450.365 kb on - strandat 1450.365 kb on - strandat 1450.421 kb on + strand, within EX28DRAFT_1439at 1450.546 kb on + strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.646 kb on + strandat 1450.646 kb on + strandat 1450.646 kb on + strandat 1450.647 kb on - strandat 1450.653 kb on - strandat 1450.653 kb on - strandat 1450.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,448,547 - +1.3
1,448,547 - +1.1
1,448,547 - +1.0
1,448,614 + -0.8
1,448,614 + -0.3
1,448,614 + -0.6
1,448,615 - +0.4
1,448,615 - -0.2
1,448,617 + -3.9
1,448,658 - -0.8
1,448,660 + +0.3
1,448,770 + +0.5
1,448,836 - -1.1
1,448,891 - -1.3
1,448,900 + +1.6
1,448,913 + -0.8
1,448,993 + +0.2
1,449,000 + -2.9
1,449,000 + -0.2
1,449,043 - +0.0
1,449,046 + -0.0
1,449,082 - -0.9
1,449,083 + +0.3
1,449,083 + -2.2
1,449,122 + -3.2
1,449,153 - EX28DRAFT_1437 0.12 +0.6
1,449,412 + EX28DRAFT_1437 0.51 +0.4
1,449,434 - EX28DRAFT_1437 0.54 +0.6
1,449,499 - EX28DRAFT_1437 0.64 +2.2
1,449,556 + EX28DRAFT_1437 0.72 -0.8
1,449,556 + EX28DRAFT_1437 0.72 -0.4
1,449,598 - EX28DRAFT_1437 0.78 +0.1
1,449,605 + EX28DRAFT_1437 0.79 +1.6
1,449,742 - -0.3
1,449,813 + +0.7
1,449,836 + -1.1
1,450,174 + EX28DRAFT_1438 0.79 -2.4
1,450,174 + EX28DRAFT_1438 0.79 -1.6
1,450,175 - EX28DRAFT_1438 0.79 +0.0
1,450,175 - EX28DRAFT_1438 0.79 -0.0
1,450,293 - -0.3
1,450,306 + +0.6
1,450,364 + -0.7
1,450,365 - +0.1
1,450,365 - -0.4
1,450,421 + EX28DRAFT_1439 0.28 +1.0
1,450,546 + EX28DRAFT_1439 0.71 +0.8
1,450,547 - EX28DRAFT_1439 0.71 +1.3
1,450,547 - EX28DRAFT_1439 0.71 +1.3
1,450,547 - EX28DRAFT_1439 0.71 -0.3
1,450,646 + -0.2
1,450,646 + +0.1
1,450,646 + -1.2
1,450,647 - +0.5
1,450,653 - +0.4
1,450,653 - -0.7
1,450,660 - +0.1

Or see this region's nucleotide sequence