Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1423 and EX28DRAFT_1424 are separated by 72 nucleotides EX28DRAFT_1424 and EX28DRAFT_1425 are separated by 9 nucleotides
EX28DRAFT_1423: EX28DRAFT_1423 - Alkyl sulfatase and related hydrolases, at 1,433,239 to 1,435,212
_1423
EX28DRAFT_1424: EX28DRAFT_1424 - diguanylate cyclase (GGDEF) domain, at 1,435,285 to 1,436,391
_1424
EX28DRAFT_1425: EX28DRAFT_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,436,401 to 1,437,387
_1425
Position (kb)
1435
1436
1437 Strain fitness (log2 ratio)
-1
0
1
2 at 1434.349 kb on + strand, within EX28DRAFT_1423 at 1434.356 kb on - strand, within EX28DRAFT_1423 at 1434.470 kb on - strand, within EX28DRAFT_1423 at 1434.491 kb on + strand, within EX28DRAFT_1423 at 1434.491 kb on + strand, within EX28DRAFT_1423 at 1434.492 kb on - strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.511 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.590 kb on - strand, within EX28DRAFT_1423 at 1434.591 kb on + strand, within EX28DRAFT_1423 at 1434.592 kb on - strand, within EX28DRAFT_1423 at 1434.781 kb on + strand, within EX28DRAFT_1423 at 1434.889 kb on + strand, within EX28DRAFT_1423 at 1434.889 kb on + strand, within EX28DRAFT_1423 at 1434.943 kb on - strand, within EX28DRAFT_1423 at 1434.943 kb on - strand, within EX28DRAFT_1423 at 1434.973 kb on + strand, within EX28DRAFT_1423 at 1435.164 kb on + strand at 1435.164 kb on + strand at 1435.165 kb on - strand at 1435.165 kb on - strand at 1435.168 kb on + strand at 1435.169 kb on - strand at 1435.274 kb on + strand at 1435.275 kb on - strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.428 kb on - strand, within EX28DRAFT_1424 at 1435.435 kb on - strand, within EX28DRAFT_1424 at 1435.614 kb on + strand, within EX28DRAFT_1424 at 1435.676 kb on + strand, within EX28DRAFT_1424 at 1435.791 kb on + strand, within EX28DRAFT_1424 at 1435.807 kb on - strand, within EX28DRAFT_1424 at 1435.841 kb on + strand, within EX28DRAFT_1424 at 1435.870 kb on - strand, within EX28DRAFT_1424 at 1436.007 kb on + strand, within EX28DRAFT_1424 at 1436.036 kb on - strand, within EX28DRAFT_1424 at 1436.381 kb on + strand at 1436.677 kb on - strand, within EX28DRAFT_1425 at 1436.847 kb on + strand, within EX28DRAFT_1425 at 1436.848 kb on - strand, within EX28DRAFT_1425 at 1436.961 kb on + strand, within EX28DRAFT_1425 at 1436.962 kb on - strand, within EX28DRAFT_1425 at 1436.966 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.069 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,434,349 + EX28DRAFT_1423 0.56 -0.1 1,434,356 - EX28DRAFT_1423 0.57 +0.3 1,434,470 - EX28DRAFT_1423 0.62 -0.8 1,434,491 + EX28DRAFT_1423 0.63 +0.2 1,434,491 + EX28DRAFT_1423 0.63 +0.5 1,434,492 - EX28DRAFT_1423 0.63 -0.1 1,434,502 + EX28DRAFT_1423 0.64 +0.0 1,434,502 + EX28DRAFT_1423 0.64 -0.4 1,434,502 + EX28DRAFT_1423 0.64 -0.0 1,434,502 + EX28DRAFT_1423 0.64 +0.3 1,434,502 + EX28DRAFT_1423 0.64 +0.4 1,434,503 - EX28DRAFT_1423 0.64 +0.3 1,434,503 - EX28DRAFT_1423 0.64 +0.3 1,434,503 - EX28DRAFT_1423 0.64 +0.6 1,434,503 - EX28DRAFT_1423 0.64 +0.1 1,434,503 - EX28DRAFT_1423 0.64 -0.1 1,434,503 - EX28DRAFT_1423 0.64 -0.8 1,434,511 + EX28DRAFT_1423 0.64 -0.0 1,434,589 + EX28DRAFT_1423 0.68 +0.3 1,434,589 + EX28DRAFT_1423 0.68 +0.1 1,434,589 + EX28DRAFT_1423 0.68 +0.2 1,434,590 - EX28DRAFT_1423 0.68 -0.4 1,434,591 + EX28DRAFT_1423 0.68 -1.3 1,434,592 - EX28DRAFT_1423 0.69 -0.6 1,434,781 + EX28DRAFT_1423 0.78 +1.4 1,434,889 + EX28DRAFT_1423 0.84 +0.1 1,434,889 + EX28DRAFT_1423 0.84 -0.0 1,434,943 - EX28DRAFT_1423 0.86 +0.8 1,434,943 - EX28DRAFT_1423 0.86 +0.0 1,434,973 + EX28DRAFT_1423 0.88 +0.1 1,435,164 + +0.9 1,435,164 + -0.7 1,435,165 - +0.3 1,435,165 - +0.4 1,435,168 + -0.3 1,435,169 - -0.0 1,435,274 + +0.7 1,435,275 - -0.8 1,435,341 + +0.1 1,435,341 + -0.5 1,435,341 + -0.9 1,435,341 + +0.2 1,435,342 - -0.7 1,435,342 - -1.1 1,435,342 - +2.0 1,435,342 - +0.3 1,435,342 - -0.0 1,435,428 - EX28DRAFT_1424 0.13 -1.1 1,435,435 - EX28DRAFT_1424 0.14 +0.3 1,435,614 + EX28DRAFT_1424 0.30 -0.8 1,435,676 + EX28DRAFT_1424 0.35 -0.4 1,435,791 + EX28DRAFT_1424 0.46 -0.2 1,435,807 - EX28DRAFT_1424 0.47 +0.3 1,435,841 + EX28DRAFT_1424 0.50 +0.1 1,435,870 - EX28DRAFT_1424 0.53 -0.2 1,436,007 + EX28DRAFT_1424 0.65 +0.0 1,436,036 - EX28DRAFT_1424 0.68 -0.3 1,436,381 + -0.7 1,436,677 - EX28DRAFT_1425 0.28 +0.1 1,436,847 + EX28DRAFT_1425 0.45 +0.1 1,436,848 - EX28DRAFT_1425 0.45 +0.3 1,436,961 + EX28DRAFT_1425 0.57 -1.0 1,436,962 - EX28DRAFT_1425 0.57 -0.0 1,436,966 + EX28DRAFT_1425 0.57 -0.0 1,437,068 + EX28DRAFT_1425 0.68 +0.2 1,437,068 + EX28DRAFT_1425 0.68 +0.1 1,437,069 - EX28DRAFT_1425 0.68 -0.3 1,437,272 - EX28DRAFT_1425 0.88 +0.6 1,437,272 - EX28DRAFT_1425 0.88 +0.1
Or see this region's nucleotide sequence