Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1416 and EX28DRAFT_1417 are separated by 7 nucleotides EX28DRAFT_1417 and EX28DRAFT_1418 are separated by 11 nucleotides EX28DRAFT_1418 and EX28DRAFT_1419 are separated by 8 nucleotides
EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365
_1416
EX28DRAFT_1417: EX28DRAFT_1417 - phenylacetate-CoA oxygenase, PaaJ subunit, at 1,425,373 to 1,425,870
_1417
EX28DRAFT_1418: EX28DRAFT_1418 - phenylacetate-CoA oxygenase, PaaI subunit, at 1,425,882 to 1,426,628
_1418
EX28DRAFT_1419: EX28DRAFT_1419 - phenylacetate-CoA oxygenase, PaaH subunit, at 1,426,637 to 1,426,924
_1419
Position (kb)
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1424.402 kb on - strand, within EX28DRAFT_1416 at 1424.445 kb on - strand, within EX28DRAFT_1416 at 1424.633 kb on + strand, within EX28DRAFT_1416 at 1424.863 kb on + strand, within EX28DRAFT_1416 at 1425.023 kb on - strand, within EX28DRAFT_1416 at 1425.078 kb on + strand, within EX28DRAFT_1416 at 1425.079 kb on - strand, within EX28DRAFT_1416 at 1425.196 kb on + strand, within EX28DRAFT_1416 at 1425.196 kb on + strand, within EX28DRAFT_1416 at 1425.197 kb on - strand, within EX28DRAFT_1416 at 1425.379 kb on - strand at 1425.390 kb on - strand at 1425.411 kb on + strand at 1425.411 kb on + strand at 1425.628 kb on + strand, within EX28DRAFT_1417 at 1425.704 kb on + strand, within EX28DRAFT_1417 at 1425.705 kb on - strand, within EX28DRAFT_1417 at 1425.705 kb on - strand, within EX28DRAFT_1417 at 1425.983 kb on - strand, within EX28DRAFT_1418 at 1425.987 kb on + strand, within EX28DRAFT_1418 at 1426.248 kb on - strand, within EX28DRAFT_1418 at 1426.465 kb on + strand, within EX28DRAFT_1418 at 1426.466 kb on - strand, within EX28DRAFT_1418 at 1426.642 kb on + strand at 1426.642 kb on + strand at 1426.642 kb on + strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.771 kb on + strand, within EX28DRAFT_1419 at 1426.771 kb on + strand, within EX28DRAFT_1419 at 1426.772 kb on - strand, within EX28DRAFT_1419
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,424,402 - EX28DRAFT_1416 0.10 +0.6 1,424,445 - EX28DRAFT_1416 0.14 +0.2 1,424,633 + EX28DRAFT_1416 0.32 +0.5 1,424,863 + EX28DRAFT_1416 0.53 +0.4 1,425,023 - EX28DRAFT_1416 0.68 +1.2 1,425,078 + EX28DRAFT_1416 0.73 -1.2 1,425,079 - EX28DRAFT_1416 0.73 -0.0 1,425,196 + EX28DRAFT_1416 0.84 +0.4 1,425,196 + EX28DRAFT_1416 0.84 +2.5 1,425,197 - EX28DRAFT_1416 0.84 +0.7 1,425,379 - +0.2 1,425,390 - -0.6 1,425,411 + -0.2 1,425,411 + +0.1 1,425,628 + EX28DRAFT_1417 0.51 -0.5 1,425,704 + EX28DRAFT_1417 0.66 +0.3 1,425,705 - EX28DRAFT_1417 0.67 +1.3 1,425,705 - EX28DRAFT_1417 0.67 +1.3 1,425,983 - EX28DRAFT_1418 0.14 -1.6 1,425,987 + EX28DRAFT_1418 0.14 -0.1 1,426,248 - EX28DRAFT_1418 0.49 -1.9 1,426,465 + EX28DRAFT_1418 0.78 -1.1 1,426,466 - EX28DRAFT_1418 0.78 -1.4 1,426,642 + +0.5 1,426,642 + -0.1 1,426,642 + -0.1 1,426,643 - +1.0 1,426,643 - -1.0 1,426,643 - -1.0 1,426,643 - -0.3 1,426,771 + EX28DRAFT_1419 0.47 -0.6 1,426,771 + EX28DRAFT_1419 0.47 -0.2 1,426,772 - EX28DRAFT_1419 0.47 -0.2
Or see this region's nucleotide sequence