Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1351

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1350 and EX28DRAFT_1351 are separated by 53 nucleotidesEX28DRAFT_1351 and EX28DRAFT_1352 are separated by 389 nucleotides EX28DRAFT_1350: EX28DRAFT_1350 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,364,149 to 1,365,150 _1350 EX28DRAFT_1351: EX28DRAFT_1351 - Uncharacterized conserved protein, at 1,365,204 to 1,365,998 _1351 EX28DRAFT_1352: EX28DRAFT_1352 - Arabinose efflux permease, at 1,366,388 to 1,367,707 _1352 Position (kb) 1365 1366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1364.299 kb on + strand, within EX28DRAFT_1350at 1364.299 kb on + strand, within EX28DRAFT_1350at 1364.299 kb on + strand, within EX28DRAFT_1350at 1364.299 kb on + strand, within EX28DRAFT_1350at 1364.417 kb on + strand, within EX28DRAFT_1350at 1364.417 kb on + strand, within EX28DRAFT_1350at 1364.422 kb on - strand, within EX28DRAFT_1350at 1364.446 kb on + strand, within EX28DRAFT_1350at 1364.448 kb on + strand, within EX28DRAFT_1350at 1364.580 kb on + strand, within EX28DRAFT_1350at 1364.580 kb on + strand, within EX28DRAFT_1350at 1364.581 kb on - strand, within EX28DRAFT_1350at 1364.581 kb on - strand, within EX28DRAFT_1350at 1364.684 kb on - strand, within EX28DRAFT_1350at 1364.758 kb on - strand, within EX28DRAFT_1350at 1364.758 kb on - strand, within EX28DRAFT_1350at 1364.949 kb on + strand, within EX28DRAFT_1350at 1364.949 kb on + strand, within EX28DRAFT_1350at 1364.950 kb on - strand, within EX28DRAFT_1350at 1364.962 kb on + strand, within EX28DRAFT_1350at 1365.097 kb on + strandat 1365.206 kb on - strandat 1365.211 kb on - strandat 1365.627 kb on - strand, within EX28DRAFT_1351at 1365.760 kb on + strand, within EX28DRAFT_1351at 1365.761 kb on - strand, within EX28DRAFT_1351at 1365.945 kb on - strandat 1366.149 kb on + strandat 1366.149 kb on + strandat 1366.152 kb on + strandat 1366.153 kb on - strandat 1366.173 kb on + strandat 1366.195 kb on - strandat 1366.195 kb on - strandat 1366.195 kb on - strandat 1366.224 kb on - strandat 1366.224 kb on - strandat 1366.358 kb on + strandat 1366.358 kb on + strandat 1366.359 kb on - strandat 1366.359 kb on - strandat 1366.359 kb on - strandat 1366.359 kb on - strandat 1366.417 kb on - strandat 1366.519 kb on + strandat 1366.568 kb on + strand, within EX28DRAFT_1352at 1366.568 kb on + strand, within EX28DRAFT_1352at 1366.569 kb on - strand, within EX28DRAFT_1352at 1366.628 kb on - strand, within EX28DRAFT_1352at 1366.648 kb on + strand, within EX28DRAFT_1352at 1366.718 kb on + strand, within EX28DRAFT_1352at 1366.718 kb on + strand, within EX28DRAFT_1352at 1366.718 kb on + strand, within EX28DRAFT_1352at 1366.719 kb on - strand, within EX28DRAFT_1352at 1366.765 kb on + strand, within EX28DRAFT_1352at 1366.826 kb on + strand, within EX28DRAFT_1352

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,364,299 + EX28DRAFT_1350 0.15 +0.1
1,364,299 + EX28DRAFT_1350 0.15 -0.2
1,364,299 + EX28DRAFT_1350 0.15 +0.1
1,364,299 + EX28DRAFT_1350 0.15 -0.2
1,364,417 + EX28DRAFT_1350 0.27 +1.4
1,364,417 + EX28DRAFT_1350 0.27 -0.0
1,364,422 - EX28DRAFT_1350 0.27 +0.6
1,364,446 + EX28DRAFT_1350 0.30 -4.3
1,364,448 + EX28DRAFT_1350 0.30 -0.4
1,364,580 + EX28DRAFT_1350 0.43 -0.4
1,364,580 + EX28DRAFT_1350 0.43 +0.7
1,364,581 - EX28DRAFT_1350 0.43 -0.6
1,364,581 - EX28DRAFT_1350 0.43 -0.0
1,364,684 - EX28DRAFT_1350 0.53 +0.3
1,364,758 - EX28DRAFT_1350 0.61 +0.7
1,364,758 - EX28DRAFT_1350 0.61 -0.2
1,364,949 + EX28DRAFT_1350 0.80 +0.4
1,364,949 + EX28DRAFT_1350 0.80 -0.1
1,364,950 - EX28DRAFT_1350 0.80 -0.6
1,364,962 + EX28DRAFT_1350 0.81 -0.2
1,365,097 + +0.6
1,365,206 - -0.8
1,365,211 - +0.6
1,365,627 - EX28DRAFT_1351 0.53 +0.2
1,365,760 + EX28DRAFT_1351 0.70 +1.5
1,365,761 - EX28DRAFT_1351 0.70 +0.0
1,365,945 - -0.8
1,366,149 + -0.5
1,366,149 + +0.5
1,366,152 + -1.9
1,366,153 - +0.0
1,366,173 + -0.5
1,366,195 - -0.4
1,366,195 - +0.3
1,366,195 - +1.4
1,366,224 - +0.2
1,366,224 - +0.3
1,366,358 + -0.0
1,366,358 + +0.7
1,366,359 - +0.3
1,366,359 - -0.9
1,366,359 - -0.9
1,366,359 - +0.5
1,366,417 - -0.7
1,366,519 + -1.2
1,366,568 + EX28DRAFT_1352 0.14 -0.3
1,366,568 + EX28DRAFT_1352 0.14 -0.1
1,366,569 - EX28DRAFT_1352 0.14 -0.3
1,366,628 - EX28DRAFT_1352 0.18 -0.9
1,366,648 + EX28DRAFT_1352 0.20 -0.5
1,366,718 + EX28DRAFT_1352 0.25 +0.6
1,366,718 + EX28DRAFT_1352 0.25 +0.4
1,366,718 + EX28DRAFT_1352 0.25 -0.6
1,366,719 - EX28DRAFT_1352 0.25 -0.3
1,366,765 + EX28DRAFT_1352 0.29 +0.4
1,366,826 + EX28DRAFT_1352 0.33 -0.7

Or see this region's nucleotide sequence