Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1346 and EX28DRAFT_1347 are separated by 739 nucleotides EX28DRAFT_1347 and EX28DRAFT_1348 are separated by 13 nucleotides
EX28DRAFT_1346: EX28DRAFT_1346 - type I secretion outer membrane protein, TolC family, at 1,359,482 to 1,360,819
_1346
EX28DRAFT_1347: EX28DRAFT_1347 - transcriptional regulator, DeoR family, at 1,361,559 to 1,362,302
_1347
EX28DRAFT_1348: EX28DRAFT_1348 - Predicted dehydrogenases and related proteins, at 1,362,316 to 1,363,383
_1348
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1360.575 kb on - strand, within EX28DRAFT_1346 at 1360.625 kb on - strand, within EX28DRAFT_1346 at 1360.628 kb on + strand, within EX28DRAFT_1346 at 1360.718 kb on - strand at 1360.730 kb on - strand at 1360.733 kb on - strand at 1360.869 kb on + strand at 1360.896 kb on + strand at 1360.897 kb on - strand at 1360.996 kb on + strand at 1361.128 kb on - strand at 1361.351 kb on - strand at 1361.419 kb on + strand at 1361.420 kb on - strand at 1361.583 kb on + strand at 1361.583 kb on + strand at 1361.584 kb on - strand at 1361.584 kb on - strand at 1361.660 kb on + strand, within EX28DRAFT_1347 at 1361.907 kb on - strand, within EX28DRAFT_1347 at 1361.936 kb on + strand, within EX28DRAFT_1347 at 1362.238 kb on + strand at 1362.239 kb on - strand at 1362.300 kb on + strand at 1362.322 kb on - strand at 1362.322 kb on - strand at 1362.369 kb on + strand at 1362.412 kb on - strand at 1362.470 kb on + strand, within EX28DRAFT_1348 at 1362.720 kb on + strand, within EX28DRAFT_1348 at 1362.879 kb on - strand, within EX28DRAFT_1348 at 1362.968 kb on + strand, within EX28DRAFT_1348 at 1362.969 kb on - strand, within EX28DRAFT_1348 at 1362.984 kb on + strand, within EX28DRAFT_1348 at 1362.985 kb on - strand, within EX28DRAFT_1348 at 1363.216 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.230 kb on - strand, within EX28DRAFT_1348
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,360,575 - EX28DRAFT_1346 0.82 +0.1 1,360,625 - EX28DRAFT_1346 0.85 -0.1 1,360,628 + EX28DRAFT_1346 0.86 +0.2 1,360,718 - +0.1 1,360,730 - +0.4 1,360,733 - +1.1 1,360,869 + -0.3 1,360,896 + -0.2 1,360,897 - +0.3 1,360,996 + +1.0 1,361,128 - +0.0 1,361,351 - +0.3 1,361,419 + -0.1 1,361,420 - -4.8 1,361,583 + +0.2 1,361,583 + +0.5 1,361,584 - +1.0 1,361,584 - -0.1 1,361,660 + EX28DRAFT_1347 0.14 +0.9 1,361,907 - EX28DRAFT_1347 0.47 +0.3 1,361,936 + EX28DRAFT_1347 0.51 +0.8 1,362,238 + +2.2 1,362,239 - +0.0 1,362,300 + -1.0 1,362,322 - -3.4 1,362,322 - +0.1 1,362,369 + -0.3 1,362,412 - +0.2 1,362,470 + EX28DRAFT_1348 0.14 +1.2 1,362,720 + EX28DRAFT_1348 0.38 -0.1 1,362,879 - EX28DRAFT_1348 0.53 -0.2 1,362,968 + EX28DRAFT_1348 0.61 -0.3 1,362,969 - EX28DRAFT_1348 0.61 +0.1 1,362,984 + EX28DRAFT_1348 0.63 -0.2 1,362,985 - EX28DRAFT_1348 0.63 +0.3 1,363,216 + EX28DRAFT_1348 0.84 +0.1 1,363,219 + EX28DRAFT_1348 0.85 -0.9 1,363,219 + EX28DRAFT_1348 0.85 -1.7 1,363,219 + EX28DRAFT_1348 0.85 +0.1 1,363,220 - EX28DRAFT_1348 0.85 +0.4 1,363,220 - EX28DRAFT_1348 0.85 +0.6 1,363,230 - EX28DRAFT_1348 0.86 +0.9
Or see this region's nucleotide sequence