Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1345 and EX28DRAFT_1346 are separated by 121 nucleotides EX28DRAFT_1346 and EX28DRAFT_1347 are separated by 739 nucleotides
EX28DRAFT_1345: EX28DRAFT_1345 - Bacterial Ig-like domain (group 3)/Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella/Putative flagellar system-associated repeat, at 1,341,355 to 1,359,360
_1345
EX28DRAFT_1346: EX28DRAFT_1346 - type I secretion outer membrane protein, TolC family, at 1,359,482 to 1,360,819
_1346
EX28DRAFT_1347: EX28DRAFT_1347 - transcriptional regulator, DeoR family, at 1,361,559 to 1,362,302
_1347
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1358.569 kb on - strand at 1358.647 kb on + strand at 1358.647 kb on + strand at 1358.648 kb on - strand at 1359.009 kb on + strand at 1359.082 kb on - strand at 1359.082 kb on - strand at 1359.152 kb on + strand at 1359.187 kb on - strand at 1359.189 kb on - strand at 1359.415 kb on + strand at 1359.415 kb on + strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.566 kb on - strand at 1359.588 kb on + strand at 1359.600 kb on - strand at 1359.675 kb on + strand, within EX28DRAFT_1346 at 1359.685 kb on + strand, within EX28DRAFT_1346 at 1359.686 kb on - strand, within EX28DRAFT_1346 at 1359.908 kb on + strand, within EX28DRAFT_1346 at 1359.909 kb on - strand, within EX28DRAFT_1346 at 1360.011 kb on + strand, within EX28DRAFT_1346 at 1360.059 kb on - strand, within EX28DRAFT_1346 at 1360.065 kb on + strand, within EX28DRAFT_1346 at 1360.065 kb on + strand, within EX28DRAFT_1346 at 1360.066 kb on - strand, within EX28DRAFT_1346 at 1360.073 kb on - strand, within EX28DRAFT_1346 at 1360.073 kb on - strand, within EX28DRAFT_1346 at 1360.188 kb on + strand, within EX28DRAFT_1346 at 1360.311 kb on - strand, within EX28DRAFT_1346 at 1360.362 kb on + strand, within EX28DRAFT_1346 at 1360.363 kb on - strand, within EX28DRAFT_1346 at 1360.363 kb on - strand, within EX28DRAFT_1346 at 1360.575 kb on - strand, within EX28DRAFT_1346 at 1360.625 kb on - strand, within EX28DRAFT_1346 at 1360.628 kb on + strand, within EX28DRAFT_1346 at 1360.718 kb on - strand at 1360.730 kb on - strand at 1360.733 kb on - strand at 1360.869 kb on + strand at 1360.896 kb on + strand at 1360.897 kb on - strand at 1360.996 kb on + strand at 1361.128 kb on - strand at 1361.351 kb on - strand at 1361.419 kb on + strand at 1361.420 kb on - strand at 1361.583 kb on + strand at 1361.583 kb on + strand at 1361.584 kb on - strand at 1361.584 kb on - strand at 1361.660 kb on + strand, within EX28DRAFT_1347
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,358,569 - -0.9 1,358,647 + -0.2 1,358,647 + +0.2 1,358,648 - -0.1 1,359,009 + -0.2 1,359,082 - +0.2 1,359,082 - -0.0 1,359,152 + -0.2 1,359,187 - +0.4 1,359,189 - +0.6 1,359,415 + -0.2 1,359,415 + -0.8 1,359,416 - -0.7 1,359,416 - +0.4 1,359,416 - +1.1 1,359,416 - -0.1 1,359,566 - -0.6 1,359,588 + +0.2 1,359,600 - -1.4 1,359,675 + EX28DRAFT_1346 0.14 +0.7 1,359,685 + EX28DRAFT_1346 0.15 -0.1 1,359,686 - EX28DRAFT_1346 0.15 -0.1 1,359,908 + EX28DRAFT_1346 0.32 -0.7 1,359,909 - EX28DRAFT_1346 0.32 +0.6 1,360,011 + EX28DRAFT_1346 0.40 +0.2 1,360,059 - EX28DRAFT_1346 0.43 +0.4 1,360,065 + EX28DRAFT_1346 0.44 -0.0 1,360,065 + EX28DRAFT_1346 0.44 +0.0 1,360,066 - EX28DRAFT_1346 0.44 +0.2 1,360,073 - EX28DRAFT_1346 0.44 -0.5 1,360,073 - EX28DRAFT_1346 0.44 -3.0 1,360,188 + EX28DRAFT_1346 0.53 -0.1 1,360,311 - EX28DRAFT_1346 0.62 +0.0 1,360,362 + EX28DRAFT_1346 0.66 +0.2 1,360,363 - EX28DRAFT_1346 0.66 +0.7 1,360,363 - EX28DRAFT_1346 0.66 +0.8 1,360,575 - EX28DRAFT_1346 0.82 +0.1 1,360,625 - EX28DRAFT_1346 0.85 -0.1 1,360,628 + EX28DRAFT_1346 0.86 +0.2 1,360,718 - +0.1 1,360,730 - +0.4 1,360,733 - +1.1 1,360,869 + -0.3 1,360,896 + -0.2 1,360,897 - +0.3 1,360,996 + +1.0 1,361,128 - +0.0 1,361,351 - +0.3 1,361,419 + -0.1 1,361,420 - -4.8 1,361,583 + +0.2 1,361,583 + +0.5 1,361,584 - +1.0 1,361,584 - -0.1 1,361,660 + EX28DRAFT_1347 0.14 +0.9
Or see this region's nucleotide sequence