Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1335

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1334 and EX28DRAFT_1335 are separated by 456 nucleotidesEX28DRAFT_1335 and EX28DRAFT_1336 are separated by 5 nucleotides EX28DRAFT_1334: EX28DRAFT_1334 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 1,328,537 to 1,330,339 _1334 EX28DRAFT_1335: EX28DRAFT_1335 - Putative threonine efflux protein, at 1,330,796 to 1,331,386 _1335 EX28DRAFT_1336: EX28DRAFT_1336 - Transcriptional regulator, at 1,331,392 to 1,332,285 _1336 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1 2at 1329.866 kb on + strand, within EX28DRAFT_1334at 1330.072 kb on - strand, within EX28DRAFT_1334at 1330.132 kb on - strand, within EX28DRAFT_1334at 1330.354 kb on - strandat 1330.509 kb on + strandat 1330.526 kb on - strandat 1330.531 kb on + strandat 1330.532 kb on - strandat 1330.532 kb on - strandat 1330.635 kb on + strandat 1330.636 kb on - strandat 1330.701 kb on + strandat 1330.738 kb on + strandat 1330.819 kb on + strandat 1330.947 kb on + strand, within EX28DRAFT_1335at 1330.952 kb on - strand, within EX28DRAFT_1335at 1330.959 kb on + strand, within EX28DRAFT_1335at 1331.035 kb on + strand, within EX28DRAFT_1335at 1331.042 kb on + strand, within EX28DRAFT_1335at 1331.394 kb on - strandat 1331.421 kb on - strandat 1331.441 kb on + strandat 1331.466 kb on + strandat 1331.466 kb on + strandat 1331.467 kb on - strandat 1331.500 kb on + strand, within EX28DRAFT_1336at 1331.501 kb on - strand, within EX28DRAFT_1336at 1331.501 kb on - strand, within EX28DRAFT_1336at 1331.631 kb on - strand, within EX28DRAFT_1336at 1331.645 kb on + strand, within EX28DRAFT_1336at 1331.788 kb on + strand, within EX28DRAFT_1336at 1331.788 kb on + strand, within EX28DRAFT_1336at 1331.883 kb on + strand, within EX28DRAFT_1336at 1331.883 kb on + strand, within EX28DRAFT_1336at 1331.884 kb on - strand, within EX28DRAFT_1336at 1331.884 kb on - strand, within EX28DRAFT_1336at 1331.917 kb on + strand, within EX28DRAFT_1336at 1331.917 kb on + strand, within EX28DRAFT_1336at 1331.998 kb on - strand, within EX28DRAFT_1336at 1332.007 kb on - strand, within EX28DRAFT_1336at 1332.034 kb on - strand, within EX28DRAFT_1336at 1332.056 kb on + strand, within EX28DRAFT_1336at 1332.056 kb on + strand, within EX28DRAFT_1336at 1332.140 kb on - strand, within EX28DRAFT_1336at 1332.199 kb on - strandat 1332.259 kb on + strandat 1332.339 kb on + strandat 1332.349 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,329,866 + EX28DRAFT_1334 0.74 +0.1
1,330,072 - EX28DRAFT_1334 0.85 -0.4
1,330,132 - EX28DRAFT_1334 0.88 -0.3
1,330,354 - +0.4
1,330,509 + -0.4
1,330,526 - -0.6
1,330,531 + -2.0
1,330,532 - +0.4
1,330,532 - -0.3
1,330,635 + -1.2
1,330,636 - -0.3
1,330,701 + +0.2
1,330,738 + +0.8
1,330,819 + -0.2
1,330,947 + EX28DRAFT_1335 0.26 -1.0
1,330,952 - EX28DRAFT_1335 0.26 -0.2
1,330,959 + EX28DRAFT_1335 0.28 -0.3
1,331,035 + EX28DRAFT_1335 0.40 -0.5
1,331,042 + EX28DRAFT_1335 0.42 -2.4
1,331,394 - -0.2
1,331,421 - -0.2
1,331,441 + +0.3
1,331,466 + -1.9
1,331,466 + -0.3
1,331,467 - +0.4
1,331,500 + EX28DRAFT_1336 0.12 -0.3
1,331,501 - EX28DRAFT_1336 0.12 +0.2
1,331,501 - EX28DRAFT_1336 0.12 +2.6
1,331,631 - EX28DRAFT_1336 0.27 -0.2
1,331,645 + EX28DRAFT_1336 0.28 -0.5
1,331,788 + EX28DRAFT_1336 0.44 -0.0
1,331,788 + EX28DRAFT_1336 0.44 +0.6
1,331,883 + EX28DRAFT_1336 0.55 +0.1
1,331,883 + EX28DRAFT_1336 0.55 -0.3
1,331,884 - EX28DRAFT_1336 0.55 +0.6
1,331,884 - EX28DRAFT_1336 0.55 -0.5
1,331,917 + EX28DRAFT_1336 0.59 +0.4
1,331,917 + EX28DRAFT_1336 0.59 +0.9
1,331,998 - EX28DRAFT_1336 0.68 +0.3
1,332,007 - EX28DRAFT_1336 0.69 +0.2
1,332,034 - EX28DRAFT_1336 0.72 +0.3
1,332,056 + EX28DRAFT_1336 0.74 -1.9
1,332,056 + EX28DRAFT_1336 0.74 +0.4
1,332,140 - EX28DRAFT_1336 0.84 -1.0
1,332,199 - +0.4
1,332,259 + -0.5
1,332,339 + +0.5
1,332,349 + +0.2

Or see this region's nucleotide sequence