Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1326 and EX28DRAFT_1327 are separated by 1 nucleotides EX28DRAFT_1327 and EX28DRAFT_1328 are separated by 143 nucleotides EX28DRAFT_1328 and EX28DRAFT_1329 overlap by 1 nucleotides
EX28DRAFT_1326: EX28DRAFT_1326 - transcriptional regulator, TraR/DksA family, at 1,323,999 to 1,324,214
_1326
EX28DRAFT_1327: EX28DRAFT_1327 - hypothetical protein, at 1,324,216 to 1,324,740
_1327
EX28DRAFT_1328: EX28DRAFT_1328 - Putative excisionase (DUF1233), at 1,324,884 to 1,325,096
_1328
EX28DRAFT_1329: EX28DRAFT_1329 - Site-specific recombinase XerD, at 1,325,096 to 1,326,376
_1329
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1323.915 kb on - strand at 1323.947 kb on + strand at 1323.973 kb on - strand at 1324.213 kb on - strand at 1324.236 kb on - strand at 1324.302 kb on - strand, within EX28DRAFT_1327 at 1324.323 kb on - strand, within EX28DRAFT_1327 at 1324.340 kb on - strand, within EX28DRAFT_1327 at 1324.347 kb on - strand, within EX28DRAFT_1327 at 1324.363 kb on - strand, within EX28DRAFT_1327 at 1324.405 kb on + strand, within EX28DRAFT_1327 at 1324.422 kb on - strand, within EX28DRAFT_1327 at 1324.422 kb on - strand, within EX28DRAFT_1327 at 1324.440 kb on + strand, within EX28DRAFT_1327 at 1324.440 kb on + strand, within EX28DRAFT_1327 at 1324.441 kb on - strand, within EX28DRAFT_1327 at 1324.474 kb on - strand, within EX28DRAFT_1327 at 1324.479 kb on + strand, within EX28DRAFT_1327 at 1324.480 kb on - strand, within EX28DRAFT_1327 at 1324.480 kb on - strand, within EX28DRAFT_1327 at 1324.484 kb on - strand, within EX28DRAFT_1327 at 1324.558 kb on + strand, within EX28DRAFT_1327 at 1324.558 kb on + strand, within EX28DRAFT_1327 at 1324.621 kb on + strand, within EX28DRAFT_1327 at 1324.622 kb on - strand, within EX28DRAFT_1327 at 1324.656 kb on + strand, within EX28DRAFT_1327 at 1324.855 kb on + strand at 1324.855 kb on + strand at 1324.857 kb on + strand at 1324.857 kb on + strand at 1325.055 kb on + strand, within EX28DRAFT_1328 at 1325.062 kb on - strand, within EX28DRAFT_1328 at 1325.080 kb on + strand at 1325.094 kb on + strand at 1325.095 kb on - strand at 1325.095 kb on - strand at 1325.209 kb on + strand at 1325.245 kb on - strand, within EX28DRAFT_1329 at 1325.245 kb on - strand, within EX28DRAFT_1329 at 1325.253 kb on + strand, within EX28DRAFT_1329 at 1325.253 kb on + strand, within EX28DRAFT_1329 at 1325.320 kb on + strand, within EX28DRAFT_1329 at 1325.333 kb on + strand, within EX28DRAFT_1329 at 1325.333 kb on + strand, within EX28DRAFT_1329 at 1325.333 kb on + strand, within EX28DRAFT_1329 at 1325.333 kb on + strand, within EX28DRAFT_1329 at 1325.410 kb on + strand, within EX28DRAFT_1329 at 1325.434 kb on + strand, within EX28DRAFT_1329 at 1325.468 kb on - strand, within EX28DRAFT_1329 at 1325.470 kb on + strand, within EX28DRAFT_1329 at 1325.910 kb on + strand, within EX28DRAFT_1329 at 1325.911 kb on - strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1326.081 kb on - strand, within EX28DRAFT_1329
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,323,915 - +0.4 1,323,947 + +0.3 1,323,973 - +0.8 1,324,213 - -0.7 1,324,236 - +2.8 1,324,302 - EX28DRAFT_1327 0.16 -0.3 1,324,323 - EX28DRAFT_1327 0.20 +0.2 1,324,340 - EX28DRAFT_1327 0.24 -0.5 1,324,347 - EX28DRAFT_1327 0.25 +0.3 1,324,363 - EX28DRAFT_1327 0.28 +0.2 1,324,405 + EX28DRAFT_1327 0.36 +0.2 1,324,422 - EX28DRAFT_1327 0.39 -0.2 1,324,422 - EX28DRAFT_1327 0.39 -0.6 1,324,440 + EX28DRAFT_1327 0.43 -0.5 1,324,440 + EX28DRAFT_1327 0.43 -2.0 1,324,441 - EX28DRAFT_1327 0.43 +0.1 1,324,474 - EX28DRAFT_1327 0.49 +0.7 1,324,479 + EX28DRAFT_1327 0.50 +0.1 1,324,480 - EX28DRAFT_1327 0.50 +0.3 1,324,480 - EX28DRAFT_1327 0.50 +0.3 1,324,484 - EX28DRAFT_1327 0.51 -1.8 1,324,558 + EX28DRAFT_1327 0.65 +0.6 1,324,558 + EX28DRAFT_1327 0.65 +1.5 1,324,621 + EX28DRAFT_1327 0.77 -0.8 1,324,622 - EX28DRAFT_1327 0.77 +0.8 1,324,656 + EX28DRAFT_1327 0.84 +0.4 1,324,855 + -0.4 1,324,855 + -0.7 1,324,857 + -1.6 1,324,857 + +0.1 1,325,055 + EX28DRAFT_1328 0.80 +0.6 1,325,062 - EX28DRAFT_1328 0.84 +0.4 1,325,080 + +0.1 1,325,094 + +0.8 1,325,095 - +0.6 1,325,095 - -0.7 1,325,209 + +0.0 1,325,245 - EX28DRAFT_1329 0.12 -1.4 1,325,245 - EX28DRAFT_1329 0.12 +0.4 1,325,253 + EX28DRAFT_1329 0.12 -0.7 1,325,253 + EX28DRAFT_1329 0.12 +0.6 1,325,320 + EX28DRAFT_1329 0.17 +0.1 1,325,333 + EX28DRAFT_1329 0.19 -2.9 1,325,333 + EX28DRAFT_1329 0.19 -0.2 1,325,333 + EX28DRAFT_1329 0.19 +0.1 1,325,333 + EX28DRAFT_1329 0.19 -0.4 1,325,410 + EX28DRAFT_1329 0.25 +0.6 1,325,434 + EX28DRAFT_1329 0.26 -0.0 1,325,468 - EX28DRAFT_1329 0.29 +0.6 1,325,470 + EX28DRAFT_1329 0.29 +0.3 1,325,910 + EX28DRAFT_1329 0.64 -0.6 1,325,911 - EX28DRAFT_1329 0.64 +0.7 1,325,954 + EX28DRAFT_1329 0.67 +0.1 1,325,954 + EX28DRAFT_1329 0.67 +1.1 1,325,954 + EX28DRAFT_1329 0.67 +0.3 1,325,955 - EX28DRAFT_1329 0.67 +0.4 1,325,955 - EX28DRAFT_1329 0.67 +0.9 1,325,955 - EX28DRAFT_1329 0.67 +0.3 1,326,081 - EX28DRAFT_1329 0.77 +0.7
Or see this region's nucleotide sequence