Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1183

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1182 and EX28DRAFT_1183 are separated by 4 nucleotidesEX28DRAFT_1183 and EX28DRAFT_1184 are separated by 135 nucleotides EX28DRAFT_1182: EX28DRAFT_1182 - Trans-aconitate methyltransferase, at 1,202,387 to 1,203,145 _1182 EX28DRAFT_1183: EX28DRAFT_1183 - Cytochrome c biogenesis protein, at 1,203,150 to 1,204,340 _1183 EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774 _1184 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1at 1202.166 kb on - strandat 1202.186 kb on + strandat 1202.649 kb on - strand, within EX28DRAFT_1182at 1202.679 kb on - strand, within EX28DRAFT_1182at 1202.760 kb on + strand, within EX28DRAFT_1182at 1202.760 kb on + strand, within EX28DRAFT_1182at 1202.880 kb on - strand, within EX28DRAFT_1182at 1202.882 kb on + strand, within EX28DRAFT_1182at 1202.882 kb on + strand, within EX28DRAFT_1182at 1202.918 kb on - strand, within EX28DRAFT_1182at 1202.933 kb on + strand, within EX28DRAFT_1182at 1202.933 kb on + strand, within EX28DRAFT_1182at 1203.097 kb on - strandat 1203.227 kb on - strandat 1203.227 kb on - strandat 1203.227 kb on - strandat 1203.231 kb on + strandat 1203.231 kb on + strandat 1203.231 kb on + strandat 1203.232 kb on - strandat 1203.232 kb on - strandat 1203.232 kb on - strandat 1203.232 kb on - strandat 1203.253 kb on + strandat 1203.253 kb on + strandat 1203.257 kb on - strandat 1203.257 kb on - strandat 1203.257 kb on - strandat 1203.302 kb on - strand, within EX28DRAFT_1183at 1203.305 kb on + strand, within EX28DRAFT_1183at 1203.305 kb on + strand, within EX28DRAFT_1183at 1203.306 kb on - strand, within EX28DRAFT_1183at 1203.306 kb on - strand, within EX28DRAFT_1183at 1203.306 kb on - strand, within EX28DRAFT_1183at 1203.306 kb on - strand, within EX28DRAFT_1183at 1203.431 kb on - strand, within EX28DRAFT_1183at 1203.464 kb on + strand, within EX28DRAFT_1183at 1203.465 kb on - strand, within EX28DRAFT_1183at 1203.465 kb on - strand, within EX28DRAFT_1183at 1203.465 kb on - strand, within EX28DRAFT_1183at 1203.729 kb on + strand, within EX28DRAFT_1183at 1203.729 kb on + strand, within EX28DRAFT_1183at 1203.730 kb on - strand, within EX28DRAFT_1183at 1203.730 kb on - strand, within EX28DRAFT_1183at 1203.825 kb on + strand, within EX28DRAFT_1183at 1203.915 kb on - strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.034 kb on + strand, within EX28DRAFT_1183at 1204.035 kb on - strand, within EX28DRAFT_1183at 1204.065 kb on - strand, within EX28DRAFT_1183at 1204.286 kb on + strandat 1204.287 kb on - strandat 1204.306 kb on - strandat 1204.329 kb on + strandat 1204.340 kb on + strandat 1204.340 kb on + strandat 1204.354 kb on + strandat 1204.354 kb on + strandat 1204.355 kb on - strandat 1204.355 kb on - strandat 1204.383 kb on - strandat 1204.409 kb on + strandat 1204.410 kb on - strandat 1204.461 kb on + strandat 1204.462 kb on - strandat 1204.462 kb on - strandat 1204.462 kb on - strandat 1204.642 kb on - strand, within EX28DRAFT_1184at 1204.642 kb on - strand, within EX28DRAFT_1184at 1204.755 kb on - strand, within EX28DRAFT_1184at 1204.755 kb on - strand, within EX28DRAFT_1184at 1204.819 kb on - strand, within EX28DRAFT_1184at 1204.949 kb on - strand, within EX28DRAFT_1184at 1205.113 kb on + strand, within EX28DRAFT_1184at 1205.114 kb on - strand, within EX28DRAFT_1184

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,202,166 - -0.0
1,202,186 + -1.5
1,202,649 - EX28DRAFT_1182 0.35 +1.3
1,202,679 - EX28DRAFT_1182 0.38 -0.1
1,202,760 + EX28DRAFT_1182 0.49 -0.3
1,202,760 + EX28DRAFT_1182 0.49 -1.3
1,202,880 - EX28DRAFT_1182 0.65 +0.6
1,202,882 + EX28DRAFT_1182 0.65 -0.5
1,202,882 + EX28DRAFT_1182 0.65 -0.1
1,202,918 - EX28DRAFT_1182 0.70 +0.3
1,202,933 + EX28DRAFT_1182 0.72 +0.8
1,202,933 + EX28DRAFT_1182 0.72 +0.6
1,203,097 - -0.3
1,203,227 - -0.7
1,203,227 - -0.1
1,203,227 - +1.7
1,203,231 + +0.5
1,203,231 + -1.2
1,203,231 + -0.4
1,203,232 - +0.3
1,203,232 - -0.5
1,203,232 - -0.2
1,203,232 - -0.7
1,203,253 + -1.6
1,203,253 + +1.4
1,203,257 - -0.8
1,203,257 - -0.9
1,203,257 - +0.7
1,203,302 - EX28DRAFT_1183 0.13 -0.8
1,203,305 + EX28DRAFT_1183 0.13 +0.9
1,203,305 + EX28DRAFT_1183 0.13 -0.7
1,203,306 - EX28DRAFT_1183 0.13 -1.5
1,203,306 - EX28DRAFT_1183 0.13 -0.5
1,203,306 - EX28DRAFT_1183 0.13 -2.0
1,203,306 - EX28DRAFT_1183 0.13 -0.6
1,203,431 - EX28DRAFT_1183 0.24 -0.1
1,203,464 + EX28DRAFT_1183 0.26 -0.5
1,203,465 - EX28DRAFT_1183 0.26 -0.7
1,203,465 - EX28DRAFT_1183 0.26 +0.2
1,203,465 - EX28DRAFT_1183 0.26 +0.4
1,203,729 + EX28DRAFT_1183 0.49 +0.1
1,203,729 + EX28DRAFT_1183 0.49 +1.5
1,203,730 - EX28DRAFT_1183 0.49 -0.6
1,203,730 - EX28DRAFT_1183 0.49 -0.8
1,203,825 + EX28DRAFT_1183 0.57 +0.0
1,203,915 - EX28DRAFT_1183 0.64 +0.7
1,204,032 + EX28DRAFT_1183 0.74 -1.7
1,204,032 + EX28DRAFT_1183 0.74 -0.5
1,204,032 + EX28DRAFT_1183 0.74 +0.6
1,204,033 - EX28DRAFT_1183 0.74 +1.2
1,204,033 - EX28DRAFT_1183 0.74 -1.3
1,204,033 - EX28DRAFT_1183 0.74 -0.2
1,204,034 + EX28DRAFT_1183 0.74 -0.2
1,204,035 - EX28DRAFT_1183 0.74 +0.1
1,204,065 - EX28DRAFT_1183 0.77 -0.5
1,204,286 + -3.0
1,204,287 - +0.2
1,204,306 - +0.0
1,204,329 + -1.2
1,204,340 + +0.1
1,204,340 + -0.3
1,204,354 + +0.8
1,204,354 + +0.4
1,204,355 - -0.1
1,204,355 - +0.1
1,204,383 - +0.2
1,204,409 + -2.3
1,204,410 - +0.6
1,204,461 + +0.0
1,204,462 - +0.3
1,204,462 - -0.9
1,204,462 - +0.3
1,204,642 - EX28DRAFT_1184 0.13 +0.5
1,204,642 - EX28DRAFT_1184 0.13 -0.0
1,204,755 - EX28DRAFT_1184 0.21 -0.2
1,204,755 - EX28DRAFT_1184 0.21 -0.7
1,204,819 - EX28DRAFT_1184 0.26 +1.1
1,204,949 - EX28DRAFT_1184 0.36 +0.5
1,205,113 + EX28DRAFT_1184 0.49 +0.1
1,205,114 - EX28DRAFT_1184 0.49 -0.4

Or see this region's nucleotide sequence