Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1182 and EX28DRAFT_1183 are separated by 4 nucleotides EX28DRAFT_1183 and EX28DRAFT_1184 are separated by 135 nucleotides
EX28DRAFT_1182: EX28DRAFT_1182 - Trans-aconitate methyltransferase, at 1,202,387 to 1,203,145
_1182
EX28DRAFT_1183: EX28DRAFT_1183 - Cytochrome c biogenesis protein, at 1,203,150 to 1,204,340
_1183
EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774
_1184
Position (kb)
1203
1204
1205 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1202.166 kb on - strand at 1202.186 kb on + strand at 1202.649 kb on - strand, within EX28DRAFT_1182 at 1202.679 kb on - strand, within EX28DRAFT_1182 at 1202.760 kb on + strand, within EX28DRAFT_1182 at 1202.760 kb on + strand, within EX28DRAFT_1182 at 1202.880 kb on - strand, within EX28DRAFT_1182 at 1202.882 kb on + strand, within EX28DRAFT_1182 at 1202.882 kb on + strand, within EX28DRAFT_1182 at 1202.918 kb on - strand, within EX28DRAFT_1182 at 1202.933 kb on + strand, within EX28DRAFT_1182 at 1202.933 kb on + strand, within EX28DRAFT_1182 at 1203.097 kb on - strand at 1203.227 kb on - strand at 1203.227 kb on - strand at 1203.227 kb on - strand at 1203.231 kb on + strand at 1203.231 kb on + strand at 1203.231 kb on + strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.253 kb on + strand at 1203.253 kb on + strand at 1203.257 kb on - strand at 1203.257 kb on - strand at 1203.257 kb on - strand at 1203.302 kb on - strand, within EX28DRAFT_1183 at 1203.305 kb on + strand, within EX28DRAFT_1183 at 1203.305 kb on + strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.431 kb on - strand, within EX28DRAFT_1183 at 1203.464 kb on + strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.729 kb on + strand, within EX28DRAFT_1183 at 1203.729 kb on + strand, within EX28DRAFT_1183 at 1203.730 kb on - strand, within EX28DRAFT_1183 at 1203.730 kb on - strand, within EX28DRAFT_1183 at 1203.825 kb on + strand, within EX28DRAFT_1183 at 1203.915 kb on - strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.034 kb on + strand, within EX28DRAFT_1183 at 1204.035 kb on - strand, within EX28DRAFT_1183 at 1204.065 kb on - strand, within EX28DRAFT_1183 at 1204.286 kb on + strand at 1204.287 kb on - strand at 1204.306 kb on - strand at 1204.329 kb on + strand at 1204.340 kb on + strand at 1204.340 kb on + strand at 1204.354 kb on + strand at 1204.354 kb on + strand at 1204.355 kb on - strand at 1204.355 kb on - strand at 1204.383 kb on - strand at 1204.409 kb on + strand at 1204.410 kb on - strand at 1204.461 kb on + strand at 1204.462 kb on - strand at 1204.462 kb on - strand at 1204.462 kb on - strand at 1204.642 kb on - strand, within EX28DRAFT_1184 at 1204.642 kb on - strand, within EX28DRAFT_1184 at 1204.755 kb on - strand, within EX28DRAFT_1184 at 1204.755 kb on - strand, within EX28DRAFT_1184 at 1204.819 kb on - strand, within EX28DRAFT_1184 at 1204.949 kb on - strand, within EX28DRAFT_1184 at 1205.113 kb on + strand, within EX28DRAFT_1184 at 1205.114 kb on - strand, within EX28DRAFT_1184
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,202,166 - -0.0 1,202,186 + -1.5 1,202,649 - EX28DRAFT_1182 0.35 +1.3 1,202,679 - EX28DRAFT_1182 0.38 -0.1 1,202,760 + EX28DRAFT_1182 0.49 -0.3 1,202,760 + EX28DRAFT_1182 0.49 -1.3 1,202,880 - EX28DRAFT_1182 0.65 +0.6 1,202,882 + EX28DRAFT_1182 0.65 -0.5 1,202,882 + EX28DRAFT_1182 0.65 -0.1 1,202,918 - EX28DRAFT_1182 0.70 +0.3 1,202,933 + EX28DRAFT_1182 0.72 +0.8 1,202,933 + EX28DRAFT_1182 0.72 +0.6 1,203,097 - -0.3 1,203,227 - -0.7 1,203,227 - -0.1 1,203,227 - +1.7 1,203,231 + +0.5 1,203,231 + -1.2 1,203,231 + -0.4 1,203,232 - +0.3 1,203,232 - -0.5 1,203,232 - -0.2 1,203,232 - -0.7 1,203,253 + -1.6 1,203,253 + +1.4 1,203,257 - -0.8 1,203,257 - -0.9 1,203,257 - +0.7 1,203,302 - EX28DRAFT_1183 0.13 -0.8 1,203,305 + EX28DRAFT_1183 0.13 +0.9 1,203,305 + EX28DRAFT_1183 0.13 -0.7 1,203,306 - EX28DRAFT_1183 0.13 -1.5 1,203,306 - EX28DRAFT_1183 0.13 -0.5 1,203,306 - EX28DRAFT_1183 0.13 -2.0 1,203,306 - EX28DRAFT_1183 0.13 -0.6 1,203,431 - EX28DRAFT_1183 0.24 -0.1 1,203,464 + EX28DRAFT_1183 0.26 -0.5 1,203,465 - EX28DRAFT_1183 0.26 -0.7 1,203,465 - EX28DRAFT_1183 0.26 +0.2 1,203,465 - EX28DRAFT_1183 0.26 +0.4 1,203,729 + EX28DRAFT_1183 0.49 +0.1 1,203,729 + EX28DRAFT_1183 0.49 +1.5 1,203,730 - EX28DRAFT_1183 0.49 -0.6 1,203,730 - EX28DRAFT_1183 0.49 -0.8 1,203,825 + EX28DRAFT_1183 0.57 +0.0 1,203,915 - EX28DRAFT_1183 0.64 +0.7 1,204,032 + EX28DRAFT_1183 0.74 -1.7 1,204,032 + EX28DRAFT_1183 0.74 -0.5 1,204,032 + EX28DRAFT_1183 0.74 +0.6 1,204,033 - EX28DRAFT_1183 0.74 +1.2 1,204,033 - EX28DRAFT_1183 0.74 -1.3 1,204,033 - EX28DRAFT_1183 0.74 -0.2 1,204,034 + EX28DRAFT_1183 0.74 -0.2 1,204,035 - EX28DRAFT_1183 0.74 +0.1 1,204,065 - EX28DRAFT_1183 0.77 -0.5 1,204,286 + -3.0 1,204,287 - +0.2 1,204,306 - +0.0 1,204,329 + -1.2 1,204,340 + +0.1 1,204,340 + -0.3 1,204,354 + +0.8 1,204,354 + +0.4 1,204,355 - -0.1 1,204,355 - +0.1 1,204,383 - +0.2 1,204,409 + -2.3 1,204,410 - +0.6 1,204,461 + +0.0 1,204,462 - +0.3 1,204,462 - -0.9 1,204,462 - +0.3 1,204,642 - EX28DRAFT_1184 0.13 +0.5 1,204,642 - EX28DRAFT_1184 0.13 -0.0 1,204,755 - EX28DRAFT_1184 0.21 -0.2 1,204,755 - EX28DRAFT_1184 0.21 -0.7 1,204,819 - EX28DRAFT_1184 0.26 +1.1 1,204,949 - EX28DRAFT_1184 0.36 +0.5 1,205,113 + EX28DRAFT_1184 0.49 +0.1 1,205,114 - EX28DRAFT_1184 0.49 -0.4
Or see this region's nucleotide sequence