Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1171

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1169 and EX28DRAFT_1170 are separated by 42 nucleotidesEX28DRAFT_1170 and EX28DRAFT_1171 are separated by 58 nucleotidesEX28DRAFT_1171 and EX28DRAFT_1172 are separated by 168 nucleotides EX28DRAFT_1169: EX28DRAFT_1169 - heavy metal efflux pump, CzcA family, at 1,190,388 to 1,193,528 _1169 EX28DRAFT_1170: EX28DRAFT_1170 - hypothetical protein, at 1,193,571 to 1,194,221 _1170 EX28DRAFT_1171: EX28DRAFT_1171 - Helix-turn-helix domain/AraC-type transcriptional regulator N-terminus, at 1,194,280 to 1,194,780 _1171 EX28DRAFT_1172: EX28DRAFT_1172 - Transcriptional regulator, at 1,194,949 to 1,195,857 _1172 Position (kb) 1194 1195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1193.474 kb on + strandat 1193.490 kb on + strandat 1193.491 kb on - strandat 1193.497 kb on + strandat 1193.497 kb on + strandat 1193.585 kb on + strandat 1193.633 kb on + strandat 1193.648 kb on + strand, within EX28DRAFT_1170at 1193.648 kb on + strand, within EX28DRAFT_1170at 1193.649 kb on - strand, within EX28DRAFT_1170at 1193.649 kb on - strand, within EX28DRAFT_1170at 1193.650 kb on + strand, within EX28DRAFT_1170at 1193.650 kb on + strand, within EX28DRAFT_1170at 1193.651 kb on - strand, within EX28DRAFT_1170at 1193.688 kb on + strand, within EX28DRAFT_1170at 1193.765 kb on - strand, within EX28DRAFT_1170at 1193.778 kb on + strand, within EX28DRAFT_1170at 1193.801 kb on + strand, within EX28DRAFT_1170at 1193.801 kb on + strand, within EX28DRAFT_1170at 1193.802 kb on - strand, within EX28DRAFT_1170at 1193.843 kb on + strand, within EX28DRAFT_1170at 1193.905 kb on - strand, within EX28DRAFT_1170at 1193.937 kb on + strand, within EX28DRAFT_1170at 1193.993 kb on + strand, within EX28DRAFT_1170at 1194.031 kb on - strand, within EX28DRAFT_1170at 1194.066 kb on + strand, within EX28DRAFT_1170at 1194.100 kb on - strand, within EX28DRAFT_1170at 1194.144 kb on + strand, within EX28DRAFT_1170at 1194.150 kb on - strand, within EX28DRAFT_1170at 1194.156 kb on - strand, within EX28DRAFT_1170at 1194.156 kb on - strand, within EX28DRAFT_1170at 1194.162 kb on - strandat 1194.236 kb on - strandat 1194.236 kb on - strandat 1194.246 kb on - strandat 1194.281 kb on + strandat 1194.282 kb on - strandat 1194.282 kb on - strandat 1194.312 kb on + strandat 1194.313 kb on - strandat 1194.313 kb on - strandat 1194.313 kb on - strandat 1194.316 kb on - strandat 1194.393 kb on - strand, within EX28DRAFT_1171at 1194.414 kb on - strand, within EX28DRAFT_1171at 1194.414 kb on - strand, within EX28DRAFT_1171at 1194.559 kb on + strand, within EX28DRAFT_1171at 1194.595 kb on - strand, within EX28DRAFT_1171at 1194.600 kb on + strand, within EX28DRAFT_1171at 1194.604 kb on + strand, within EX28DRAFT_1171at 1194.607 kb on - strand, within EX28DRAFT_1171at 1194.645 kb on + strand, within EX28DRAFT_1171at 1194.646 kb on - strand, within EX28DRAFT_1171at 1194.646 kb on - strand, within EX28DRAFT_1171at 1194.678 kb on - strand, within EX28DRAFT_1171at 1194.678 kb on - strand, within EX28DRAFT_1171at 1194.682 kb on + strand, within EX28DRAFT_1171at 1194.683 kb on - strand, within EX28DRAFT_1171at 1194.683 kb on - strand, within EX28DRAFT_1171at 1195.124 kb on - strand, within EX28DRAFT_1172at 1195.166 kb on - strand, within EX28DRAFT_1172at 1195.166 kb on - strand, within EX28DRAFT_1172at 1195.286 kb on - strand, within EX28DRAFT_1172at 1195.289 kb on - strand, within EX28DRAFT_1172at 1195.300 kb on - strand, within EX28DRAFT_1172at 1195.329 kb on - strand, within EX28DRAFT_1172at 1195.329 kb on - strand, within EX28DRAFT_1172at 1195.498 kb on + strand, within EX28DRAFT_1172at 1195.498 kb on + strand, within EX28DRAFT_1172at 1195.740 kb on + strand, within EX28DRAFT_1172at 1195.741 kb on - strand, within EX28DRAFT_1172at 1195.741 kb on - strand, within EX28DRAFT_1172

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,193,474 + -0.5
1,193,490 + -1.6
1,193,491 - +0.0
1,193,497 + -0.0
1,193,497 + +0.1
1,193,585 + +1.0
1,193,633 + +1.7
1,193,648 + EX28DRAFT_1170 0.12 +0.8
1,193,648 + EX28DRAFT_1170 0.12 -0.1
1,193,649 - EX28DRAFT_1170 0.12 +0.0
1,193,649 - EX28DRAFT_1170 0.12 +0.7
1,193,650 + EX28DRAFT_1170 0.12 -0.4
1,193,650 + EX28DRAFT_1170 0.12 +0.2
1,193,651 - EX28DRAFT_1170 0.12 -0.0
1,193,688 + EX28DRAFT_1170 0.18 -0.0
1,193,765 - EX28DRAFT_1170 0.30 +0.9
1,193,778 + EX28DRAFT_1170 0.32 +0.2
1,193,801 + EX28DRAFT_1170 0.35 +0.3
1,193,801 + EX28DRAFT_1170 0.35 +0.5
1,193,802 - EX28DRAFT_1170 0.35 +0.1
1,193,843 + EX28DRAFT_1170 0.42 -1.3
1,193,905 - EX28DRAFT_1170 0.51 +0.7
1,193,937 + EX28DRAFT_1170 0.56 +0.8
1,193,993 + EX28DRAFT_1170 0.65 -0.1
1,194,031 - EX28DRAFT_1170 0.71 -0.3
1,194,066 + EX28DRAFT_1170 0.76 -0.5
1,194,100 - EX28DRAFT_1170 0.81 -2.4
1,194,144 + EX28DRAFT_1170 0.88 -0.6
1,194,150 - EX28DRAFT_1170 0.89 -3.6
1,194,156 - EX28DRAFT_1170 0.90 -0.0
1,194,156 - EX28DRAFT_1170 0.90 -0.5
1,194,162 - -0.0
1,194,236 - -1.4
1,194,236 - +0.8
1,194,246 - -0.8
1,194,281 + -0.4
1,194,282 - -0.3
1,194,282 - -0.1
1,194,312 + +0.1
1,194,313 - +0.2
1,194,313 - -0.1
1,194,313 - -0.8
1,194,316 - +0.8
1,194,393 - EX28DRAFT_1171 0.23 -0.8
1,194,414 - EX28DRAFT_1171 0.27 +0.3
1,194,414 - EX28DRAFT_1171 0.27 -0.3
1,194,559 + EX28DRAFT_1171 0.56 -0.6
1,194,595 - EX28DRAFT_1171 0.63 -0.5
1,194,600 + EX28DRAFT_1171 0.64 +0.1
1,194,604 + EX28DRAFT_1171 0.65 -0.7
1,194,607 - EX28DRAFT_1171 0.65 -1.1
1,194,645 + EX28DRAFT_1171 0.73 -0.1
1,194,646 - EX28DRAFT_1171 0.73 -0.4
1,194,646 - EX28DRAFT_1171 0.73 -4.2
1,194,678 - EX28DRAFT_1171 0.79 -0.7
1,194,678 - EX28DRAFT_1171 0.79 +0.4
1,194,682 + EX28DRAFT_1171 0.80 -0.3
1,194,683 - EX28DRAFT_1171 0.80 -1.4
1,194,683 - EX28DRAFT_1171 0.80 +0.6
1,195,124 - EX28DRAFT_1172 0.19 +0.0
1,195,166 - EX28DRAFT_1172 0.24 +0.3
1,195,166 - EX28DRAFT_1172 0.24 +0.6
1,195,286 - EX28DRAFT_1172 0.37 -2.1
1,195,289 - EX28DRAFT_1172 0.37 +1.2
1,195,300 - EX28DRAFT_1172 0.39 +0.5
1,195,329 - EX28DRAFT_1172 0.42 -0.3
1,195,329 - EX28DRAFT_1172 0.42 +0.2
1,195,498 + EX28DRAFT_1172 0.60 -0.3
1,195,498 + EX28DRAFT_1172 0.60 -0.3
1,195,740 + EX28DRAFT_1172 0.87 -0.4
1,195,741 - EX28DRAFT_1172 0.87 -0.4
1,195,741 - EX28DRAFT_1172 0.87 -0.1

Or see this region's nucleotide sequence