Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1118 and EX28DRAFT_1119 are separated by 266 nucleotides EX28DRAFT_1119 and EX28DRAFT_1120 are separated by 62 nucleotides
EX28DRAFT_1118: EX28DRAFT_1118 - transcriptional regulator, RpiR family, at 1,130,514 to 1,131,368
_1118
EX28DRAFT_1119: EX28DRAFT_1119 - Lysophospholipase, at 1,131,635 to 1,133,116
_1119
EX28DRAFT_1120: EX28DRAFT_1120 - FOG: EAL domain, at 1,133,179 to 1,134,423
_1120
Position (kb)
1131
1132
1133
1134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.792 kb on - strand, within EX28DRAFT_1118 at 1130.819 kb on - strand, within EX28DRAFT_1118 at 1130.879 kb on - strand, within EX28DRAFT_1118 at 1131.209 kb on + strand, within EX28DRAFT_1118 at 1131.470 kb on + strand at 1131.470 kb on + strand at 1131.522 kb on + strand at 1131.522 kb on + strand at 1131.523 kb on - strand at 1131.602 kb on + strand at 1131.602 kb on + strand at 1131.602 kb on + strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.608 kb on + strand at 1131.609 kb on - strand at 1131.712 kb on - strand at 1131.740 kb on + strand at 1131.740 kb on + strand at 1131.740 kb on + strand at 1131.839 kb on - strand, within EX28DRAFT_1119 at 1131.910 kb on + strand, within EX28DRAFT_1119 at 1131.927 kb on - strand, within EX28DRAFT_1119 at 1131.961 kb on + strand, within EX28DRAFT_1119 at 1131.988 kb on - strand, within EX28DRAFT_1119 at 1131.988 kb on - strand, within EX28DRAFT_1119 at 1132.079 kb on + strand, within EX28DRAFT_1119 at 1132.080 kb on - strand, within EX28DRAFT_1119 at 1132.080 kb on - strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.278 kb on - strand, within EX28DRAFT_1119 at 1132.278 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119 at 1132.447 kb on + strand, within EX28DRAFT_1119 at 1132.447 kb on + strand, within EX28DRAFT_1119 at 1132.447 kb on + strand, within EX28DRAFT_1119 at 1132.448 kb on - strand, within EX28DRAFT_1119 at 1132.454 kb on + strand, within EX28DRAFT_1119 at 1132.460 kb on + strand, within EX28DRAFT_1119 at 1132.460 kb on + strand, within EX28DRAFT_1119 at 1132.460 kb on + strand, within EX28DRAFT_1119 at 1132.461 kb on - strand, within EX28DRAFT_1119 at 1132.461 kb on - strand, within EX28DRAFT_1119 at 1132.462 kb on + strand, within EX28DRAFT_1119 at 1132.463 kb on - strand, within EX28DRAFT_1119 at 1132.601 kb on - strand, within EX28DRAFT_1119 at 1132.780 kb on + strand, within EX28DRAFT_1119 at 1132.889 kb on + strand, within EX28DRAFT_1119 at 1132.937 kb on + strand, within EX28DRAFT_1119 at 1133.064 kb on - strand at 1133.069 kb on + strand at 1133.069 kb on + strand at 1133.071 kb on + strand at 1133.071 kb on + strand at 1133.072 kb on - strand at 1133.072 kb on - strand at 1133.072 kb on - strand at 1133.072 kb on - strand at 1133.072 kb on - strand at 1133.141 kb on + strand at 1133.156 kb on - strand at 1133.156 kb on - strand at 1133.159 kb on + strand at 1133.168 kb on + strand at 1133.172 kb on - strand at 1133.316 kb on + strand, within EX28DRAFT_1120 at 1133.388 kb on + strand, within EX28DRAFT_1120 at 1133.389 kb on - strand, within EX28DRAFT_1120 at 1133.564 kb on - strand, within EX28DRAFT_1120 at 1133.564 kb on - strand, within EX28DRAFT_1120 at 1133.645 kb on - strand, within EX28DRAFT_1120 at 1133.649 kb on - strand, within EX28DRAFT_1120 at 1133.842 kb on + strand, within EX28DRAFT_1120 at 1133.842 kb on + strand, within EX28DRAFT_1120 at 1133.878 kb on + strand, within EX28DRAFT_1120 at 1133.919 kb on + strand, within EX28DRAFT_1120 at 1133.919 kb on + strand, within EX28DRAFT_1120 at 1133.920 kb on - strand, within EX28DRAFT_1120
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,130,682 + EX28DRAFT_1118 0.20 -0.6 1,130,682 + EX28DRAFT_1118 0.20 -0.1 1,130,682 + EX28DRAFT_1118 0.20 -0.2 1,130,792 - EX28DRAFT_1118 0.33 +1.1 1,130,819 - EX28DRAFT_1118 0.36 -0.1 1,130,879 - EX28DRAFT_1118 0.43 +0.2 1,131,209 + EX28DRAFT_1118 0.81 +0.1 1,131,470 + +0.6 1,131,470 + -1.0 1,131,522 + +1.0 1,131,522 + -1.1 1,131,523 - +0.5 1,131,602 + +0.1 1,131,602 + -1.0 1,131,602 + -0.8 1,131,603 - -0.1 1,131,603 - +0.6 1,131,603 - +0.1 1,131,603 - +0.6 1,131,608 + -0.2 1,131,609 - -0.8 1,131,712 - +1.4 1,131,740 + -0.1 1,131,740 + +1.5 1,131,740 + -1.7 1,131,839 - EX28DRAFT_1119 0.14 +0.1 1,131,910 + EX28DRAFT_1119 0.19 -0.6 1,131,927 - EX28DRAFT_1119 0.20 -0.3 1,131,961 + EX28DRAFT_1119 0.22 -0.4 1,131,988 - EX28DRAFT_1119 0.24 -0.4 1,131,988 - EX28DRAFT_1119 0.24 -0.2 1,132,079 + EX28DRAFT_1119 0.30 +0.0 1,132,080 - EX28DRAFT_1119 0.30 +0.5 1,132,080 - EX28DRAFT_1119 0.30 -0.1 1,132,277 + EX28DRAFT_1119 0.43 +2.1 1,132,277 + EX28DRAFT_1119 0.43 -1.4 1,132,277 + EX28DRAFT_1119 0.43 -0.3 1,132,278 - EX28DRAFT_1119 0.43 +0.2 1,132,278 - EX28DRAFT_1119 0.43 -0.4 1,132,330 - EX28DRAFT_1119 0.47 -0.1 1,132,330 - EX28DRAFT_1119 0.47 +0.2 1,132,330 - EX28DRAFT_1119 0.47 -0.5 1,132,447 + EX28DRAFT_1119 0.55 -0.9 1,132,447 + EX28DRAFT_1119 0.55 -0.2 1,132,447 + EX28DRAFT_1119 0.55 -2.2 1,132,448 - EX28DRAFT_1119 0.55 -2.3 1,132,454 + EX28DRAFT_1119 0.55 -1.5 1,132,460 + EX28DRAFT_1119 0.56 +0.0 1,132,460 + EX28DRAFT_1119 0.56 +0.8 1,132,460 + EX28DRAFT_1119 0.56 +1.9 1,132,461 - EX28DRAFT_1119 0.56 +0.2 1,132,461 - EX28DRAFT_1119 0.56 -1.2 1,132,462 + EX28DRAFT_1119 0.56 +0.2 1,132,463 - EX28DRAFT_1119 0.56 -2.8 1,132,601 - EX28DRAFT_1119 0.65 +0.3 1,132,780 + EX28DRAFT_1119 0.77 +0.5 1,132,889 + EX28DRAFT_1119 0.85 -0.5 1,132,937 + EX28DRAFT_1119 0.88 -0.1 1,133,064 - +1.9 1,133,069 + -0.3 1,133,069 + -1.2 1,133,071 + -1.1 1,133,071 + +0.2 1,133,072 - -0.5 1,133,072 - -0.0 1,133,072 - -0.2 1,133,072 - +1.7 1,133,072 - -0.1 1,133,141 + +0.2 1,133,156 - +0.6 1,133,156 - -1.2 1,133,159 + +0.6 1,133,168 + -0.6 1,133,172 - +0.4 1,133,316 + EX28DRAFT_1120 0.11 -0.5 1,133,388 + EX28DRAFT_1120 0.17 +0.4 1,133,389 - EX28DRAFT_1120 0.17 +0.5 1,133,564 - EX28DRAFT_1120 0.31 +0.6 1,133,564 - EX28DRAFT_1120 0.31 +0.0 1,133,645 - EX28DRAFT_1120 0.37 -0.2 1,133,649 - EX28DRAFT_1120 0.38 -0.5 1,133,842 + EX28DRAFT_1120 0.53 -0.9 1,133,842 + EX28DRAFT_1120 0.53 -0.6 1,133,878 + EX28DRAFT_1120 0.56 -0.3 1,133,919 + EX28DRAFT_1120 0.59 -0.8 1,133,919 + EX28DRAFT_1120 0.59 -0.9 1,133,920 - EX28DRAFT_1120 0.60 +0.2
Or see this region's nucleotide sequence