Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1101 and EX28DRAFT_1102 are separated by 198 nucleotides EX28DRAFT_1102 and EX28DRAFT_1103 are separated by 424 nucleotides
EX28DRAFT_1101: EX28DRAFT_1101 - Zn-dependent alcohol dehydrogenases, at 1,113,477 to 1,114,487
_1101
EX28DRAFT_1102: EX28DRAFT_1102 - ATPase components of ABC transporters with duplicated ATPase domains, at 1,114,686 to 1,116,398
_1102
EX28DRAFT_1103: EX28DRAFT_1103 - Malic enzyme, at 1,116,823 to 1,118,520
_1103
Position (kb)
1114
1115
1116
1117 Strain fitness (log2 ratio)
-1
0
1 at 1113.986 kb on - strand, within EX28DRAFT_1101 at 1114.037 kb on - strand, within EX28DRAFT_1101 at 1114.202 kb on + strand, within EX28DRAFT_1101 at 1114.202 kb on + strand, within EX28DRAFT_1101 at 1114.202 kb on + strand, within EX28DRAFT_1101 at 1114.202 kb on + strand, within EX28DRAFT_1101 at 1114.203 kb on - strand, within EX28DRAFT_1101 at 1114.297 kb on - strand, within EX28DRAFT_1101 at 1114.325 kb on + strand, within EX28DRAFT_1101 at 1114.380 kb on + strand, within EX28DRAFT_1101 at 1114.492 kb on - strand at 1114.530 kb on - strand at 1114.530 kb on - strand at 1114.530 kb on - strand at 1114.530 kb on - strand at 1114.530 kb on - strand at 1114.583 kb on + strand at 1114.583 kb on + strand at 1114.583 kb on + strand at 1114.583 kb on + strand at 1114.584 kb on - strand at 1114.584 kb on - strand at 1114.584 kb on - strand at 1114.584 kb on - strand at 1114.634 kb on + strand at 1114.651 kb on - strand at 1114.688 kb on - strand at 1114.981 kb on - strand, within EX28DRAFT_1102 at 1115.373 kb on - strand, within EX28DRAFT_1102 at 1115.373 kb on - strand, within EX28DRAFT_1102 at 1115.794 kb on + strand, within EX28DRAFT_1102 at 1115.794 kb on + strand, within EX28DRAFT_1102 at 1115.918 kb on + strand, within EX28DRAFT_1102 at 1115.919 kb on - strand, within EX28DRAFT_1102 at 1116.323 kb on + strand at 1116.388 kb on - strand at 1116.417 kb on + strand at 1116.455 kb on + strand at 1116.515 kb on + strand at 1116.591 kb on - strand at 1116.598 kb on - strand at 1116.610 kb on + strand at 1116.610 kb on + strand at 1116.610 kb on + strand at 1116.610 kb on + strand at 1116.611 kb on - strand at 1116.611 kb on - strand at 1116.613 kb on - strand at 1116.613 kb on - strand at 1116.614 kb on + strand at 1116.614 kb on + strand at 1116.622 kb on - strand at 1116.675 kb on - strand at 1116.825 kb on - strand at 1116.846 kb on + strand at 1116.846 kb on + strand at 1116.846 kb on + strand at 1116.847 kb on - strand at 1117.127 kb on + strand, within EX28DRAFT_1103 at 1117.127 kb on + strand, within EX28DRAFT_1103 at 1117.127 kb on + strand, within EX28DRAFT_1103 at 1117.127 kb on + strand, within EX28DRAFT_1103 at 1117.128 kb on - strand, within EX28DRAFT_1103 at 1117.128 kb on - strand, within EX28DRAFT_1103
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,113,986 - EX28DRAFT_1101 0.50 -0.6 1,114,037 - EX28DRAFT_1101 0.55 +0.3 1,114,202 + EX28DRAFT_1101 0.72 +1.1 1,114,202 + EX28DRAFT_1101 0.72 +0.3 1,114,202 + EX28DRAFT_1101 0.72 -0.1 1,114,202 + EX28DRAFT_1101 0.72 +0.9 1,114,203 - EX28DRAFT_1101 0.72 -0.4 1,114,297 - EX28DRAFT_1101 0.81 -0.4 1,114,325 + EX28DRAFT_1101 0.84 -1.2 1,114,380 + EX28DRAFT_1101 0.89 -0.7 1,114,492 - +0.1 1,114,530 - +0.0 1,114,530 - -0.2 1,114,530 - +0.1 1,114,530 - -0.2 1,114,530 - +0.2 1,114,583 + +0.2 1,114,583 + -0.6 1,114,583 + +0.1 1,114,583 + -0.2 1,114,584 - +0.3 1,114,584 - +0.4 1,114,584 - +0.6 1,114,584 - -0.5 1,114,634 + -0.0 1,114,651 - -0.4 1,114,688 - +0.2 1,114,981 - EX28DRAFT_1102 0.17 +0.3 1,115,373 - EX28DRAFT_1102 0.40 +0.4 1,115,373 - EX28DRAFT_1102 0.40 -1.5 1,115,794 + EX28DRAFT_1102 0.65 +1.3 1,115,794 + EX28DRAFT_1102 0.65 +0.2 1,115,918 + EX28DRAFT_1102 0.72 +0.1 1,115,919 - EX28DRAFT_1102 0.72 +0.6 1,116,323 + +0.2 1,116,388 - +0.1 1,116,417 + -0.2 1,116,455 + +0.1 1,116,515 + -0.3 1,116,591 - +1.5 1,116,598 - -0.1 1,116,610 + +0.5 1,116,610 + +0.4 1,116,610 + -0.4 1,116,610 + -0.5 1,116,611 - -0.8 1,116,611 - +0.2 1,116,613 - +1.4 1,116,613 - +0.7 1,116,614 + -0.4 1,116,614 + -0.5 1,116,622 - +0.8 1,116,675 - -0.7 1,116,825 - +0.2 1,116,846 + -0.1 1,116,846 + -0.0 1,116,846 + +0.3 1,116,847 - -0.1 1,117,127 + EX28DRAFT_1103 0.18 +0.7 1,117,127 + EX28DRAFT_1103 0.18 -1.3 1,117,127 + EX28DRAFT_1103 0.18 +0.1 1,117,127 + EX28DRAFT_1103 0.18 +0.9 1,117,128 - EX28DRAFT_1103 0.18 +0.4 1,117,128 - EX28DRAFT_1103 0.18 +0.6
Or see this region's nucleotide sequence