Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1089 and EX28DRAFT_1090 are separated by 254 nucleotides EX28DRAFT_1090 and EX28DRAFT_1091 overlap by 1 nucleotides EX28DRAFT_1091 and EX28DRAFT_1092 are separated by 187 nucleotides
EX28DRAFT_1089: EX28DRAFT_1089 - polyphosphate kinase 2, PA0141 family, at 1,101,019 to 1,101,837
_1089
EX28DRAFT_1090: EX28DRAFT_1090 - hypothetical protein, at 1,102,092 to 1,102,460
_1090
EX28DRAFT_1091: EX28DRAFT_1091 - Protein of unknown function (DUF3828), at 1,102,460 to 1,102,966
_1091
EX28DRAFT_1092: EX28DRAFT_1092 - Arabinose efflux permease, at 1,103,154 to 1,104,329
_1092
Position (kb)
1102
1103 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1101.545 kb on + strand, within EX28DRAFT_1089 at 1101.687 kb on + strand, within EX28DRAFT_1089 at 1101.755 kb on - strand, within EX28DRAFT_1089 at 1101.755 kb on - strand, within EX28DRAFT_1089 at 1101.894 kb on + strand at 1101.909 kb on + strand at 1101.984 kb on + strand at 1102.003 kb on + strand at 1102.004 kb on - strand at 1102.004 kb on - strand at 1102.042 kb on + strand at 1102.059 kb on - strand at 1102.071 kb on - strand at 1102.078 kb on + strand at 1102.078 kb on + strand at 1102.087 kb on + strand at 1102.088 kb on - strand at 1102.088 kb on - strand at 1102.155 kb on - strand, within EX28DRAFT_1090 at 1102.166 kb on + strand, within EX28DRAFT_1090 at 1102.246 kb on + strand, within EX28DRAFT_1090 at 1102.247 kb on - strand, within EX28DRAFT_1090 at 1102.249 kb on + strand, within EX28DRAFT_1090 at 1102.249 kb on + strand, within EX28DRAFT_1090 at 1102.284 kb on - strand, within EX28DRAFT_1090 at 1102.312 kb on + strand, within EX28DRAFT_1090 at 1102.339 kb on + strand, within EX28DRAFT_1090 at 1102.352 kb on + strand, within EX28DRAFT_1090 at 1102.352 kb on + strand, within EX28DRAFT_1090 at 1102.353 kb on - strand, within EX28DRAFT_1090 at 1102.353 kb on - strand, within EX28DRAFT_1090 at 1102.353 kb on - strand, within EX28DRAFT_1090 at 1102.353 kb on - strand, within EX28DRAFT_1090 at 1102.353 kb on - strand, within EX28DRAFT_1090 at 1102.356 kb on + strand, within EX28DRAFT_1090 at 1102.356 kb on + strand, within EX28DRAFT_1090 at 1102.356 kb on + strand, within EX28DRAFT_1090 at 1102.356 kb on + strand, within EX28DRAFT_1090 at 1102.357 kb on - strand, within EX28DRAFT_1090 at 1102.357 kb on - strand, within EX28DRAFT_1090 at 1102.357 kb on - strand, within EX28DRAFT_1090 at 1102.357 kb on - strand, within EX28DRAFT_1090 at 1102.477 kb on - strand at 1102.504 kb on + strand at 1102.504 kb on + strand at 1102.504 kb on + strand at 1102.504 kb on + strand at 1102.505 kb on - strand at 1102.505 kb on - strand at 1102.622 kb on - strand, within EX28DRAFT_1091 at 1102.625 kb on + strand, within EX28DRAFT_1091 at 1102.625 kb on + strand, within EX28DRAFT_1091 at 1102.642 kb on + strand, within EX28DRAFT_1091 at 1102.643 kb on - strand, within EX28DRAFT_1091 at 1102.705 kb on + strand, within EX28DRAFT_1091 at 1102.706 kb on - strand, within EX28DRAFT_1091 at 1102.709 kb on + strand, within EX28DRAFT_1091 at 1102.711 kb on + strand, within EX28DRAFT_1091 at 1102.721 kb on + strand, within EX28DRAFT_1091 at 1102.785 kb on + strand, within EX28DRAFT_1091 at 1102.824 kb on + strand, within EX28DRAFT_1091 at 1102.824 kb on + strand, within EX28DRAFT_1091 at 1102.824 kb on + strand, within EX28DRAFT_1091 at 1102.825 kb on - strand, within EX28DRAFT_1091 at 1102.888 kb on - strand, within EX28DRAFT_1091 at 1102.930 kb on + strand at 1102.971 kb on + strand at 1103.059 kb on - strand at 1103.059 kb on - strand at 1103.102 kb on + strand at 1103.219 kb on + strand at 1103.231 kb on - strand at 1103.279 kb on + strand, within EX28DRAFT_1092 at 1103.279 kb on + strand, within EX28DRAFT_1092 at 1103.280 kb on - strand, within EX28DRAFT_1092 at 1103.332 kb on + strand, within EX28DRAFT_1092 at 1103.424 kb on + strand, within EX28DRAFT_1092 at 1103.425 kb on - strand, within EX28DRAFT_1092 at 1103.475 kb on - strand, within EX28DRAFT_1092 at 1103.558 kb on + strand, within EX28DRAFT_1092 at 1103.626 kb on - strand, within EX28DRAFT_1092 at 1103.829 kb on - strand, within EX28DRAFT_1092
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,101,545 + EX28DRAFT_1089 0.64 +0.1 1,101,687 + EX28DRAFT_1089 0.82 -0.3 1,101,755 - EX28DRAFT_1089 0.90 -1.1 1,101,755 - EX28DRAFT_1089 0.90 -0.3 1,101,894 + +0.0 1,101,909 + +0.7 1,101,984 + -0.3 1,102,003 + -0.9 1,102,004 - -1.6 1,102,004 - +0.9 1,102,042 + +0.4 1,102,059 - +0.4 1,102,071 - -0.9 1,102,078 + -1.2 1,102,078 + +0.2 1,102,087 + -0.1 1,102,088 - -0.0 1,102,088 - +0.3 1,102,155 - EX28DRAFT_1090 0.17 -0.4 1,102,166 + EX28DRAFT_1090 0.20 -0.0 1,102,246 + EX28DRAFT_1090 0.42 +0.3 1,102,247 - EX28DRAFT_1090 0.42 +0.2 1,102,249 + EX28DRAFT_1090 0.43 +0.2 1,102,249 + EX28DRAFT_1090 0.43 +0.1 1,102,284 - EX28DRAFT_1090 0.52 +0.8 1,102,312 + EX28DRAFT_1090 0.60 -0.2 1,102,339 + EX28DRAFT_1090 0.67 +1.4 1,102,352 + EX28DRAFT_1090 0.70 -0.0 1,102,352 + EX28DRAFT_1090 0.70 -0.1 1,102,353 - EX28DRAFT_1090 0.71 +1.1 1,102,353 - EX28DRAFT_1090 0.71 -0.1 1,102,353 - EX28DRAFT_1090 0.71 -0.6 1,102,353 - EX28DRAFT_1090 0.71 -0.3 1,102,353 - EX28DRAFT_1090 0.71 -0.1 1,102,356 + EX28DRAFT_1090 0.72 -0.1 1,102,356 + EX28DRAFT_1090 0.72 +0.6 1,102,356 + EX28DRAFT_1090 0.72 -1.0 1,102,356 + EX28DRAFT_1090 0.72 +0.1 1,102,357 - EX28DRAFT_1090 0.72 +0.2 1,102,357 - EX28DRAFT_1090 0.72 -1.0 1,102,357 - EX28DRAFT_1090 0.72 -0.3 1,102,357 - EX28DRAFT_1090 0.72 -0.0 1,102,477 - +0.0 1,102,504 + +0.3 1,102,504 + +1.4 1,102,504 + -1.2 1,102,504 + +0.1 1,102,505 - -0.2 1,102,505 - -0.6 1,102,622 - EX28DRAFT_1091 0.32 +1.7 1,102,625 + EX28DRAFT_1091 0.33 +0.4 1,102,625 + EX28DRAFT_1091 0.33 +0.4 1,102,642 + EX28DRAFT_1091 0.36 -0.3 1,102,643 - EX28DRAFT_1091 0.36 -0.6 1,102,705 + EX28DRAFT_1091 0.48 +0.1 1,102,706 - EX28DRAFT_1091 0.49 +0.9 1,102,709 + EX28DRAFT_1091 0.49 -1.9 1,102,711 + EX28DRAFT_1091 0.50 +1.6 1,102,721 + EX28DRAFT_1091 0.51 +0.5 1,102,785 + EX28DRAFT_1091 0.64 -1.4 1,102,824 + EX28DRAFT_1091 0.72 -0.2 1,102,824 + EX28DRAFT_1091 0.72 -0.4 1,102,824 + EX28DRAFT_1091 0.72 -0.3 1,102,825 - EX28DRAFT_1091 0.72 -3.8 1,102,888 - EX28DRAFT_1091 0.84 -0.5 1,102,930 + -0.0 1,102,971 + -0.0 1,103,059 - -0.7 1,103,059 - +1.9 1,103,102 + +1.5 1,103,219 + -0.8 1,103,231 - +0.1 1,103,279 + EX28DRAFT_1092 0.11 +0.7 1,103,279 + EX28DRAFT_1092 0.11 +0.1 1,103,280 - EX28DRAFT_1092 0.11 +0.2 1,103,332 + EX28DRAFT_1092 0.15 -0.4 1,103,424 + EX28DRAFT_1092 0.23 +0.3 1,103,425 - EX28DRAFT_1092 0.23 -1.0 1,103,475 - EX28DRAFT_1092 0.27 -0.9 1,103,558 + EX28DRAFT_1092 0.34 +0.2 1,103,626 - EX28DRAFT_1092 0.40 +0.1 1,103,829 - EX28DRAFT_1092 0.57 -0.7
Or see this region's nucleotide sequence