Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1089

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1086 and EX28DRAFT_1087 are separated by 51 nucleotidesEX28DRAFT_1087 and EX28DRAFT_1088 overlap by 1 nucleotidesEX28DRAFT_1088 and EX28DRAFT_1089 are separated by 102 nucleotidesEX28DRAFT_1089 and EX28DRAFT_1090 are separated by 254 nucleotidesEX28DRAFT_1090 and EX28DRAFT_1091 overlap by 1 nucleotides EX28DRAFT_1086: EX28DRAFT_1086 - formate dehydrogenase, gamma subunit, at 1,099,697 to 1,100,353 _1086 EX28DRAFT_1087: EX28DRAFT_1087 - CcdB protein, at 1,100,405 to 1,100,728 _1087 EX28DRAFT_1088: EX28DRAFT_1088 - hypothetical protein, at 1,100,728 to 1,100,916 _1088 EX28DRAFT_1089: EX28DRAFT_1089 - polyphosphate kinase 2, PA0141 family, at 1,101,019 to 1,101,837 _1089 EX28DRAFT_1090: EX28DRAFT_1090 - hypothetical protein, at 1,102,092 to 1,102,460 _1090 EX28DRAFT_1091: EX28DRAFT_1091 - Protein of unknown function (DUF3828), at 1,102,460 to 1,102,966 _1091 Position (kb) 1101 1102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.108 kb on + strand, within EX28DRAFT_1086at 1100.121 kb on - strand, within EX28DRAFT_1086at 1100.203 kb on + strand, within EX28DRAFT_1086at 1100.203 kb on + strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.210 kb on - strand, within EX28DRAFT_1086at 1100.352 kb on - strandat 1100.406 kb on + strandat 1100.406 kb on + strandat 1100.410 kb on + strandat 1100.447 kb on - strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.472 kb on - strand, within EX28DRAFT_1087at 1100.475 kb on + strand, within EX28DRAFT_1087at 1100.579 kb on - strand, within EX28DRAFT_1087at 1100.592 kb on + strand, within EX28DRAFT_1087at 1100.592 kb on + strand, within EX28DRAFT_1087at 1100.641 kb on - strand, within EX28DRAFT_1087at 1100.875 kb on - strand, within EX28DRAFT_1088at 1100.990 kb on + strandat 1101.006 kb on + strandat 1101.119 kb on + strand, within EX28DRAFT_1089at 1101.249 kb on - strand, within EX28DRAFT_1089at 1101.276 kb on + strand, within EX28DRAFT_1089at 1101.276 kb on + strand, within EX28DRAFT_1089at 1101.545 kb on + strand, within EX28DRAFT_1089at 1101.687 kb on + strand, within EX28DRAFT_1089at 1101.755 kb on - strand, within EX28DRAFT_1089at 1101.755 kb on - strand, within EX28DRAFT_1089at 1101.894 kb on + strandat 1101.909 kb on + strandat 1101.984 kb on + strandat 1102.003 kb on + strandat 1102.004 kb on - strandat 1102.004 kb on - strandat 1102.042 kb on + strandat 1102.059 kb on - strandat 1102.071 kb on - strandat 1102.078 kb on + strandat 1102.078 kb on + strandat 1102.087 kb on + strandat 1102.088 kb on - strandat 1102.088 kb on - strandat 1102.155 kb on - strand, within EX28DRAFT_1090at 1102.166 kb on + strand, within EX28DRAFT_1090at 1102.246 kb on + strand, within EX28DRAFT_1090at 1102.247 kb on - strand, within EX28DRAFT_1090at 1102.249 kb on + strand, within EX28DRAFT_1090at 1102.249 kb on + strand, within EX28DRAFT_1090at 1102.284 kb on - strand, within EX28DRAFT_1090at 1102.312 kb on + strand, within EX28DRAFT_1090at 1102.339 kb on + strand, within EX28DRAFT_1090at 1102.352 kb on + strand, within EX28DRAFT_1090at 1102.352 kb on + strand, within EX28DRAFT_1090at 1102.353 kb on - strand, within EX28DRAFT_1090at 1102.353 kb on - strand, within EX28DRAFT_1090at 1102.353 kb on - strand, within EX28DRAFT_1090at 1102.353 kb on - strand, within EX28DRAFT_1090at 1102.353 kb on - strand, within EX28DRAFT_1090at 1102.356 kb on + strand, within EX28DRAFT_1090at 1102.356 kb on + strand, within EX28DRAFT_1090at 1102.356 kb on + strand, within EX28DRAFT_1090at 1102.356 kb on + strand, within EX28DRAFT_1090at 1102.357 kb on - strand, within EX28DRAFT_1090at 1102.357 kb on - strand, within EX28DRAFT_1090at 1102.357 kb on - strand, within EX28DRAFT_1090at 1102.357 kb on - strand, within EX28DRAFT_1090at 1102.477 kb on - strandat 1102.504 kb on + strandat 1102.504 kb on + strandat 1102.504 kb on + strandat 1102.504 kb on + strandat 1102.505 kb on - strandat 1102.505 kb on - strandat 1102.622 kb on - strand, within EX28DRAFT_1091at 1102.625 kb on + strand, within EX28DRAFT_1091at 1102.625 kb on + strand, within EX28DRAFT_1091at 1102.642 kb on + strand, within EX28DRAFT_1091at 1102.643 kb on - strand, within EX28DRAFT_1091at 1102.705 kb on + strand, within EX28DRAFT_1091at 1102.706 kb on - strand, within EX28DRAFT_1091at 1102.709 kb on + strand, within EX28DRAFT_1091at 1102.711 kb on + strand, within EX28DRAFT_1091at 1102.721 kb on + strand, within EX28DRAFT_1091at 1102.785 kb on + strand, within EX28DRAFT_1091at 1102.824 kb on + strand, within EX28DRAFT_1091at 1102.824 kb on + strand, within EX28DRAFT_1091at 1102.824 kb on + strand, within EX28DRAFT_1091at 1102.825 kb on - strand, within EX28DRAFT_1091

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,100,021 + EX28DRAFT_1086 0.49 -0.7
1,100,021 + EX28DRAFT_1086 0.49 +0.5
1,100,021 + EX28DRAFT_1086 0.49 +0.5
1,100,108 + EX28DRAFT_1086 0.63 -0.2
1,100,121 - EX28DRAFT_1086 0.65 -0.1
1,100,203 + EX28DRAFT_1086 0.77 +0.3
1,100,203 + EX28DRAFT_1086 0.77 -2.1
1,100,204 - EX28DRAFT_1086 0.77 -0.2
1,100,204 - EX28DRAFT_1086 0.77 +0.4
1,100,204 - EX28DRAFT_1086 0.77 +1.6
1,100,207 + EX28DRAFT_1086 0.78 +0.3
1,100,207 + EX28DRAFT_1086 0.78 +0.5
1,100,207 + EX28DRAFT_1086 0.78 +0.6
1,100,207 + EX28DRAFT_1086 0.78 -0.4
1,100,207 + EX28DRAFT_1086 0.78 -0.1
1,100,207 + EX28DRAFT_1086 0.78 +0.5
1,100,207 + EX28DRAFT_1086 0.78 +0.1
1,100,208 - EX28DRAFT_1086 0.78 +0.3
1,100,208 - EX28DRAFT_1086 0.78 -0.1
1,100,208 - EX28DRAFT_1086 0.78 -0.4
1,100,208 - EX28DRAFT_1086 0.78 -0.3
1,100,208 - EX28DRAFT_1086 0.78 +0.1
1,100,208 - EX28DRAFT_1086 0.78 +0.7
1,100,208 - EX28DRAFT_1086 0.78 -0.3
1,100,208 - EX28DRAFT_1086 0.78 -1.9
1,100,208 - EX28DRAFT_1086 0.78 -1.4
1,100,208 - EX28DRAFT_1086 0.78 +0.0
1,100,208 - EX28DRAFT_1086 0.78 -1.0
1,100,208 - EX28DRAFT_1086 0.78 -2.5
1,100,210 - EX28DRAFT_1086 0.78 -0.3
1,100,352 - -0.9
1,100,406 + -0.6
1,100,406 + -0.3
1,100,410 + -0.6
1,100,447 - EX28DRAFT_1087 0.13 -0.1
1,100,471 + EX28DRAFT_1087 0.20 +0.4
1,100,471 + EX28DRAFT_1087 0.20 -0.5
1,100,471 + EX28DRAFT_1087 0.20 +0.5
1,100,472 - EX28DRAFT_1087 0.21 -0.2
1,100,475 + EX28DRAFT_1087 0.22 +0.0
1,100,579 - EX28DRAFT_1087 0.54 -0.3
1,100,592 + EX28DRAFT_1087 0.58 -0.6
1,100,592 + EX28DRAFT_1087 0.58 +0.8
1,100,641 - EX28DRAFT_1087 0.73 +1.2
1,100,875 - EX28DRAFT_1088 0.78 +0.5
1,100,990 + +0.1
1,101,006 + +0.4
1,101,119 + EX28DRAFT_1089 0.12 -0.3
1,101,249 - EX28DRAFT_1089 0.28 -0.2
1,101,276 + EX28DRAFT_1089 0.31 -1.7
1,101,276 + EX28DRAFT_1089 0.31 -0.3
1,101,545 + EX28DRAFT_1089 0.64 +0.1
1,101,687 + EX28DRAFT_1089 0.82 -0.3
1,101,755 - EX28DRAFT_1089 0.90 -1.1
1,101,755 - EX28DRAFT_1089 0.90 -0.3
1,101,894 + +0.0
1,101,909 + +0.7
1,101,984 + -0.3
1,102,003 + -0.9
1,102,004 - -1.6
1,102,004 - +0.9
1,102,042 + +0.4
1,102,059 - +0.4
1,102,071 - -0.9
1,102,078 + -1.2
1,102,078 + +0.2
1,102,087 + -0.1
1,102,088 - -0.0
1,102,088 - +0.3
1,102,155 - EX28DRAFT_1090 0.17 -0.4
1,102,166 + EX28DRAFT_1090 0.20 -0.0
1,102,246 + EX28DRAFT_1090 0.42 +0.3
1,102,247 - EX28DRAFT_1090 0.42 +0.2
1,102,249 + EX28DRAFT_1090 0.43 +0.2
1,102,249 + EX28DRAFT_1090 0.43 +0.1
1,102,284 - EX28DRAFT_1090 0.52 +0.8
1,102,312 + EX28DRAFT_1090 0.60 -0.2
1,102,339 + EX28DRAFT_1090 0.67 +1.4
1,102,352 + EX28DRAFT_1090 0.70 -0.0
1,102,352 + EX28DRAFT_1090 0.70 -0.1
1,102,353 - EX28DRAFT_1090 0.71 +1.1
1,102,353 - EX28DRAFT_1090 0.71 -0.1
1,102,353 - EX28DRAFT_1090 0.71 -0.6
1,102,353 - EX28DRAFT_1090 0.71 -0.3
1,102,353 - EX28DRAFT_1090 0.71 -0.1
1,102,356 + EX28DRAFT_1090 0.72 -0.1
1,102,356 + EX28DRAFT_1090 0.72 +0.6
1,102,356 + EX28DRAFT_1090 0.72 -1.0
1,102,356 + EX28DRAFT_1090 0.72 +0.1
1,102,357 - EX28DRAFT_1090 0.72 +0.2
1,102,357 - EX28DRAFT_1090 0.72 -1.0
1,102,357 - EX28DRAFT_1090 0.72 -0.3
1,102,357 - EX28DRAFT_1090 0.72 -0.0
1,102,477 - +0.0
1,102,504 + +0.3
1,102,504 + +1.4
1,102,504 + -1.2
1,102,504 + +0.1
1,102,505 - -0.2
1,102,505 - -0.6
1,102,622 - EX28DRAFT_1091 0.32 +1.7
1,102,625 + EX28DRAFT_1091 0.33 +0.4
1,102,625 + EX28DRAFT_1091 0.33 +0.4
1,102,642 + EX28DRAFT_1091 0.36 -0.3
1,102,643 - EX28DRAFT_1091 0.36 -0.6
1,102,705 + EX28DRAFT_1091 0.48 +0.1
1,102,706 - EX28DRAFT_1091 0.49 +0.9
1,102,709 + EX28DRAFT_1091 0.49 -1.9
1,102,711 + EX28DRAFT_1091 0.50 +1.6
1,102,721 + EX28DRAFT_1091 0.51 +0.5
1,102,785 + EX28DRAFT_1091 0.64 -1.4
1,102,824 + EX28DRAFT_1091 0.72 -0.2
1,102,824 + EX28DRAFT_1091 0.72 -0.4
1,102,824 + EX28DRAFT_1091 0.72 -0.3
1,102,825 - EX28DRAFT_1091 0.72 -3.8

Or see this region's nucleotide sequence