Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1074 and EX28DRAFT_1075 are separated by 28 nucleotides EX28DRAFT_1075 and EX28DRAFT_1076 overlap by 8 nucleotides EX28DRAFT_1076 and EX28DRAFT_1077 overlap by 4 nucleotides
EX28DRAFT_1074: EX28DRAFT_1074 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,086,608 to 1,087,765
_1074
EX28DRAFT_1075: EX28DRAFT_1075 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,087,794 to 1,088,513
_1075
EX28DRAFT_1076: EX28DRAFT_1076 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,088,506 to 1,089,273
_1076
EX28DRAFT_1077: EX28DRAFT_1077 - ABC-type branched-chain amino acid transport system, permease component, at 1,089,270 to 1,090,376
_1077
Position (kb)
1088
1089
1090 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1087.583 kb on - strand, within EX28DRAFT_1074 at 1087.586 kb on - strand, within EX28DRAFT_1074 at 1087.717 kb on + strand at 1087.817 kb on - strand at 1088.414 kb on + strand, within EX28DRAFT_1075 at 1088.474 kb on - strand at 1088.592 kb on + strand, within EX28DRAFT_1076 at 1088.597 kb on + strand, within EX28DRAFT_1076 at 1089.075 kb on - strand, within EX28DRAFT_1076 at 1089.257 kb on - strand at 1089.275 kb on + strand at 1089.275 kb on + strand at 1089.276 kb on - strand at 1089.634 kb on + strand, within EX28DRAFT_1077 at 1089.635 kb on - strand, within EX28DRAFT_1077 at 1089.635 kb on - strand, within EX28DRAFT_1077 at 1089.740 kb on + strand, within EX28DRAFT_1077 at 1089.773 kb on - strand, within EX28DRAFT_1077 at 1089.816 kb on + strand, within EX28DRAFT_1077 at 1089.817 kb on - strand, within EX28DRAFT_1077 at 1089.961 kb on + strand, within EX28DRAFT_1077 at 1089.996 kb on + strand, within EX28DRAFT_1077 at 1090.037 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.150 kb on + strand, within EX28DRAFT_1077 at 1090.199 kb on + strand, within EX28DRAFT_1077 at 1090.224 kb on - strand, within EX28DRAFT_1077 at 1090.225 kb on + strand, within EX28DRAFT_1077 at 1090.225 kb on + strand, within EX28DRAFT_1077 at 1090.226 kb on - strand, within EX28DRAFT_1077 at 1090.226 kb on - strand, within EX28DRAFT_1077 at 1090.259 kb on - strand, within EX28DRAFT_1077
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,087,583 - EX28DRAFT_1074 0.84 +0.6 1,087,586 - EX28DRAFT_1074 0.84 +1.0 1,087,717 + +0.1 1,087,817 - -2.5 1,088,414 + EX28DRAFT_1075 0.86 +0.5 1,088,474 - +0.2 1,088,592 + EX28DRAFT_1076 0.11 +0.7 1,088,597 + EX28DRAFT_1076 0.12 +1.1 1,089,075 - EX28DRAFT_1076 0.74 +0.5 1,089,257 - +0.6 1,089,275 + +0.3 1,089,275 + +0.4 1,089,276 - -0.9 1,089,634 + EX28DRAFT_1077 0.33 +0.3 1,089,635 - EX28DRAFT_1077 0.33 +2.2 1,089,635 - EX28DRAFT_1077 0.33 -0.5 1,089,740 + EX28DRAFT_1077 0.42 -1.5 1,089,773 - EX28DRAFT_1077 0.45 +0.6 1,089,816 + EX28DRAFT_1077 0.49 -0.2 1,089,817 - EX28DRAFT_1077 0.49 -0.4 1,089,961 + EX28DRAFT_1077 0.62 -0.1 1,089,996 + EX28DRAFT_1077 0.66 -0.0 1,090,037 + EX28DRAFT_1077 0.69 +0.4 1,090,048 + EX28DRAFT_1077 0.70 +1.0 1,090,048 + EX28DRAFT_1077 0.70 -0.4 1,090,048 + EX28DRAFT_1077 0.70 -1.0 1,090,150 + EX28DRAFT_1077 0.79 -0.2 1,090,199 + EX28DRAFT_1077 0.84 -0.3 1,090,224 - EX28DRAFT_1077 0.86 -0.7 1,090,225 + EX28DRAFT_1077 0.86 +0.0 1,090,225 + EX28DRAFT_1077 0.86 +0.1 1,090,226 - EX28DRAFT_1077 0.86 -0.7 1,090,226 - EX28DRAFT_1077 0.86 +0.7 1,090,259 - EX28DRAFT_1077 0.89 +0.0
Or see this region's nucleotide sequence