Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1058

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotidesEX28DRAFT_1057 and EX28DRAFT_1058 are separated by 41 nucleotidesEX28DRAFT_1058 and EX28DRAFT_1059 are separated by 37 nucleotidesEX28DRAFT_1059 and EX28DRAFT_1060 are separated by 191 nucleotides EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276 _1056 EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173 _1057 EX28DRAFT_1058: EX28DRAFT_1058 - Glutathione S-transferase, at 1,069,215 to 1,069,832 _1058 EX28DRAFT_1059: EX28DRAFT_1059 - Uncharacterized protein, 4-oxalocrotonate tautomerase homolog, at 1,069,870 to 1,070,100 _1059 EX28DRAFT_1060: EX28DRAFT_1060 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,070,292 to 1,071,293 _1060 Position (kb) 1069 1070Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1068.224 kb on + strandat 1068.224 kb on + strandat 1068.281 kb on + strandat 1068.292 kb on + strandat 1068.292 kb on + strandat 1068.293 kb on - strandat 1068.660 kb on + strand, within EX28DRAFT_1057at 1068.866 kb on - strand, within EX28DRAFT_1057at 1068.895 kb on + strand, within EX28DRAFT_1057at 1068.895 kb on + strand, within EX28DRAFT_1057at 1068.896 kb on - strand, within EX28DRAFT_1057at 1068.896 kb on - strand, within EX28DRAFT_1057at 1068.896 kb on - strand, within EX28DRAFT_1057at 1068.898 kb on - strand, within EX28DRAFT_1057at 1068.898 kb on - strand, within EX28DRAFT_1057at 1068.950 kb on - strand, within EX28DRAFT_1057at 1069.007 kb on - strand, within EX28DRAFT_1057at 1069.169 kb on - strandat 1069.169 kb on - strandat 1069.169 kb on - strandat 1069.169 kb on - strandat 1069.171 kb on + strandat 1069.182 kb on + strandat 1069.220 kb on + strandat 1069.538 kb on + strand, within EX28DRAFT_1058at 1069.539 kb on - strand, within EX28DRAFT_1058at 1069.542 kb on + strand, within EX28DRAFT_1058at 1069.543 kb on - strand, within EX28DRAFT_1058at 1069.543 kb on - strand, within EX28DRAFT_1058at 1069.624 kb on - strand, within EX28DRAFT_1058at 1069.695 kb on + strand, within EX28DRAFT_1058at 1069.695 kb on + strand, within EX28DRAFT_1058at 1069.780 kb on + strandat 1069.781 kb on - strandat 1069.781 kb on - strandat 1069.781 kb on - strandat 1069.781 kb on - strandat 1069.824 kb on - strandat 1069.869 kb on + strandat 1069.869 kb on + strandat 1069.880 kb on + strandat 1069.880 kb on + strandat 1069.880 kb on + strandat 1069.881 kb on - strandat 1069.881 kb on - strandat 1069.881 kb on - strandat 1069.881 kb on - strandat 1069.881 kb on - strandat 1069.957 kb on - strand, within EX28DRAFT_1059at 1070.073 kb on - strand, within EX28DRAFT_1059at 1070.089 kb on + strandat 1070.090 kb on - strandat 1070.098 kb on + strandat 1070.185 kb on + strandat 1070.186 kb on - strandat 1070.275 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,068,224 + +0.1
1,068,224 + +0.1
1,068,281 + +0.6
1,068,292 + +0.1
1,068,292 + -0.6
1,068,293 - -0.1
1,068,660 + EX28DRAFT_1057 0.42 -0.4
1,068,866 - EX28DRAFT_1057 0.65 +1.2
1,068,895 + EX28DRAFT_1057 0.69 +0.8
1,068,895 + EX28DRAFT_1057 0.69 +0.1
1,068,896 - EX28DRAFT_1057 0.69 +0.5
1,068,896 - EX28DRAFT_1057 0.69 +0.1
1,068,896 - EX28DRAFT_1057 0.69 +0.4
1,068,898 - EX28DRAFT_1057 0.69 -1.0
1,068,898 - EX28DRAFT_1057 0.69 -0.6
1,068,950 - EX28DRAFT_1057 0.75 +0.5
1,069,007 - EX28DRAFT_1057 0.81 +0.2
1,069,169 - +0.9
1,069,169 - -0.1
1,069,169 - -0.1
1,069,169 - -0.5
1,069,171 + -0.2
1,069,182 + -0.6
1,069,220 + -0.1
1,069,538 + EX28DRAFT_1058 0.52 +1.9
1,069,539 - EX28DRAFT_1058 0.52 -0.6
1,069,542 + EX28DRAFT_1058 0.53 -1.0
1,069,543 - EX28DRAFT_1058 0.53 +1.5
1,069,543 - EX28DRAFT_1058 0.53 -0.9
1,069,624 - EX28DRAFT_1058 0.66 +0.6
1,069,695 + EX28DRAFT_1058 0.78 +0.8
1,069,695 + EX28DRAFT_1058 0.78 +2.9
1,069,780 + -0.0
1,069,781 - +0.1
1,069,781 - -1.3
1,069,781 - -0.4
1,069,781 - -0.2
1,069,824 - -0.9
1,069,869 + +0.6
1,069,869 + +0.9
1,069,880 + +1.1
1,069,880 + -1.9
1,069,880 + +0.2
1,069,881 - -0.4
1,069,881 - +0.4
1,069,881 - -0.1
1,069,881 - +0.5
1,069,881 - -0.2
1,069,957 - EX28DRAFT_1059 0.38 -1.8
1,070,073 - EX28DRAFT_1059 0.88 +0.5
1,070,089 + +0.1
1,070,090 - +0.2
1,070,098 + +0.8
1,070,185 + +0.5
1,070,186 - +0.3
1,070,275 + +0.3

Or see this region's nucleotide sequence