Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotides EX28DRAFT_1057 and EX28DRAFT_1058 are separated by 41 nucleotides EX28DRAFT_1058 and EX28DRAFT_1059 are separated by 37 nucleotides EX28DRAFT_1059 and EX28DRAFT_1060 are separated by 191 nucleotides
EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276
_1056
EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173
_1057
EX28DRAFT_1058: EX28DRAFT_1058 - Glutathione S-transferase, at 1,069,215 to 1,069,832
_1058
EX28DRAFT_1059: EX28DRAFT_1059 - Uncharacterized protein, 4-oxalocrotonate tautomerase homolog, at 1,069,870 to 1,070,100
_1059
EX28DRAFT_1060: EX28DRAFT_1060 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,070,292 to 1,071,293
_1060
Position (kb)
1069
1070 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1068.224 kb on + strand at 1068.224 kb on + strand at 1068.281 kb on + strand at 1068.292 kb on + strand at 1068.292 kb on + strand at 1068.293 kb on - strand at 1068.660 kb on + strand, within EX28DRAFT_1057 at 1068.866 kb on - strand, within EX28DRAFT_1057 at 1068.895 kb on + strand, within EX28DRAFT_1057 at 1068.895 kb on + strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.898 kb on - strand, within EX28DRAFT_1057 at 1068.898 kb on - strand, within EX28DRAFT_1057 at 1068.950 kb on - strand, within EX28DRAFT_1057 at 1069.007 kb on - strand, within EX28DRAFT_1057 at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.171 kb on + strand at 1069.182 kb on + strand at 1069.220 kb on + strand at 1069.538 kb on + strand, within EX28DRAFT_1058 at 1069.539 kb on - strand, within EX28DRAFT_1058 at 1069.542 kb on + strand, within EX28DRAFT_1058 at 1069.543 kb on - strand, within EX28DRAFT_1058 at 1069.543 kb on - strand, within EX28DRAFT_1058 at 1069.624 kb on - strand, within EX28DRAFT_1058 at 1069.695 kb on + strand, within EX28DRAFT_1058 at 1069.695 kb on + strand, within EX28DRAFT_1058 at 1069.780 kb on + strand at 1069.781 kb on - strand at 1069.781 kb on - strand at 1069.781 kb on - strand at 1069.781 kb on - strand at 1069.824 kb on - strand at 1069.869 kb on + strand at 1069.869 kb on + strand at 1069.880 kb on + strand at 1069.880 kb on + strand at 1069.880 kb on + strand at 1069.881 kb on - strand at 1069.881 kb on - strand at 1069.881 kb on - strand at 1069.881 kb on - strand at 1069.881 kb on - strand at 1069.957 kb on - strand, within EX28DRAFT_1059 at 1070.073 kb on - strand, within EX28DRAFT_1059 at 1070.089 kb on + strand at 1070.090 kb on - strand at 1070.098 kb on + strand at 1070.185 kb on + strand at 1070.186 kb on - strand at 1070.275 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,068,224 + +0.1 1,068,224 + +0.1 1,068,281 + +0.6 1,068,292 + +0.1 1,068,292 + -0.6 1,068,293 - -0.1 1,068,660 + EX28DRAFT_1057 0.42 -0.4 1,068,866 - EX28DRAFT_1057 0.65 +1.2 1,068,895 + EX28DRAFT_1057 0.69 +0.8 1,068,895 + EX28DRAFT_1057 0.69 +0.1 1,068,896 - EX28DRAFT_1057 0.69 +0.5 1,068,896 - EX28DRAFT_1057 0.69 +0.1 1,068,896 - EX28DRAFT_1057 0.69 +0.4 1,068,898 - EX28DRAFT_1057 0.69 -1.0 1,068,898 - EX28DRAFT_1057 0.69 -0.6 1,068,950 - EX28DRAFT_1057 0.75 +0.5 1,069,007 - EX28DRAFT_1057 0.81 +0.2 1,069,169 - +0.9 1,069,169 - -0.1 1,069,169 - -0.1 1,069,169 - -0.5 1,069,171 + -0.2 1,069,182 + -0.6 1,069,220 + -0.1 1,069,538 + EX28DRAFT_1058 0.52 +1.9 1,069,539 - EX28DRAFT_1058 0.52 -0.6 1,069,542 + EX28DRAFT_1058 0.53 -1.0 1,069,543 - EX28DRAFT_1058 0.53 +1.5 1,069,543 - EX28DRAFT_1058 0.53 -0.9 1,069,624 - EX28DRAFT_1058 0.66 +0.6 1,069,695 + EX28DRAFT_1058 0.78 +0.8 1,069,695 + EX28DRAFT_1058 0.78 +2.9 1,069,780 + -0.0 1,069,781 - +0.1 1,069,781 - -1.3 1,069,781 - -0.4 1,069,781 - -0.2 1,069,824 - -0.9 1,069,869 + +0.6 1,069,869 + +0.9 1,069,880 + +1.1 1,069,880 + -1.9 1,069,880 + +0.2 1,069,881 - -0.4 1,069,881 - +0.4 1,069,881 - -0.1 1,069,881 - +0.5 1,069,881 - -0.2 1,069,957 - EX28DRAFT_1059 0.38 -1.8 1,070,073 - EX28DRAFT_1059 0.88 +0.5 1,070,089 + +0.1 1,070,090 - +0.2 1,070,098 + +0.8 1,070,185 + +0.5 1,070,186 - +0.3 1,070,275 + +0.3
Or see this region's nucleotide sequence