Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotides EX28DRAFT_1055 and EX28DRAFT_1056 overlap by 17 nucleotides EX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotides EX28DRAFT_1057 and EX28DRAFT_1058 are separated by 41 nucleotides
EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583
_1054
EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519
_1055
EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276
_1056
EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173
_1057
EX28DRAFT_1058: EX28DRAFT_1058 - Glutathione S-transferase, at 1,069,215 to 1,069,832
_1058
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1066.507 kb on - strand, within EX28DRAFT_1054 at 1066.572 kb on - strand at 1066.935 kb on + strand, within EX28DRAFT_1055 at 1067.073 kb on + strand, within EX28DRAFT_1055 at 1067.076 kb on - strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.305 kb on - strand, within EX28DRAFT_1055 at 1067.391 kb on + strand, within EX28DRAFT_1055 at 1067.392 kb on - strand, within EX28DRAFT_1055 at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.695 kb on - strand, within EX28DRAFT_1056 at 1067.722 kb on + strand, within EX28DRAFT_1056 at 1068.224 kb on + strand at 1068.224 kb on + strand at 1068.281 kb on + strand at 1068.292 kb on + strand at 1068.292 kb on + strand at 1068.293 kb on - strand at 1068.660 kb on + strand, within EX28DRAFT_1057 at 1068.866 kb on - strand, within EX28DRAFT_1057 at 1068.895 kb on + strand, within EX28DRAFT_1057 at 1068.895 kb on + strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.896 kb on - strand, within EX28DRAFT_1057 at 1068.898 kb on - strand, within EX28DRAFT_1057 at 1068.898 kb on - strand, within EX28DRAFT_1057 at 1068.950 kb on - strand, within EX28DRAFT_1057 at 1069.007 kb on - strand, within EX28DRAFT_1057 at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.169 kb on - strand at 1069.171 kb on + strand at 1069.182 kb on + strand at 1069.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,066,507 - EX28DRAFT_1054 0.85 +0.2 1,066,572 - +0.5 1,066,935 + EX28DRAFT_1055 0.37 -0.1 1,067,073 + EX28DRAFT_1055 0.52 +1.5 1,067,076 - EX28DRAFT_1055 0.52 +0.1 1,067,259 + EX28DRAFT_1055 0.72 -0.7 1,067,259 + EX28DRAFT_1055 0.72 -0.9 1,067,260 - EX28DRAFT_1055 0.72 -0.1 1,067,260 - EX28DRAFT_1055 0.72 +0.1 1,067,260 - EX28DRAFT_1055 0.72 -0.2 1,067,286 + EX28DRAFT_1055 0.75 +0.1 1,067,286 + EX28DRAFT_1055 0.75 -0.3 1,067,286 + EX28DRAFT_1055 0.75 +0.2 1,067,287 - EX28DRAFT_1055 0.75 -0.6 1,067,287 - EX28DRAFT_1055 0.75 -1.8 1,067,287 - EX28DRAFT_1055 0.75 +0.1 1,067,287 - EX28DRAFT_1055 0.75 -0.0 1,067,304 + EX28DRAFT_1055 0.77 -1.9 1,067,304 + EX28DRAFT_1055 0.77 -0.3 1,067,304 + EX28DRAFT_1055 0.77 -0.1 1,067,305 - EX28DRAFT_1055 0.77 -0.5 1,067,391 + EX28DRAFT_1055 0.86 -0.2 1,067,392 - EX28DRAFT_1055 0.86 +1.2 1,067,527 - -0.8 1,067,527 - +0.7 1,067,527 - +1.8 1,067,527 - +0.3 1,067,695 - EX28DRAFT_1056 0.25 +1.0 1,067,722 + EX28DRAFT_1056 0.28 +0.1 1,068,224 + +0.1 1,068,224 + +0.1 1,068,281 + +0.6 1,068,292 + +0.1 1,068,292 + -0.6 1,068,293 - -0.1 1,068,660 + EX28DRAFT_1057 0.42 -0.4 1,068,866 - EX28DRAFT_1057 0.65 +1.2 1,068,895 + EX28DRAFT_1057 0.69 +0.8 1,068,895 + EX28DRAFT_1057 0.69 +0.1 1,068,896 - EX28DRAFT_1057 0.69 +0.5 1,068,896 - EX28DRAFT_1057 0.69 +0.1 1,068,896 - EX28DRAFT_1057 0.69 +0.4 1,068,898 - EX28DRAFT_1057 0.69 -1.0 1,068,898 - EX28DRAFT_1057 0.69 -0.6 1,068,950 - EX28DRAFT_1057 0.75 +0.5 1,069,007 - EX28DRAFT_1057 0.81 +0.2 1,069,169 - +0.9 1,069,169 - -0.1 1,069,169 - -0.1 1,069,169 - -0.5 1,069,171 + -0.2 1,069,182 + -0.6 1,069,220 + -0.1
Or see this region's nucleotide sequence