Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotides EX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotides EX28DRAFT_1055 and EX28DRAFT_1056 overlap by 17 nucleotides EX28DRAFT_1056 and EX28DRAFT_1057 are separated by 9 nucleotides
EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064
_1053
EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583
_1054
EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519
_1055
EX28DRAFT_1056: EX28DRAFT_1056 - ABC-type polar amino acid transport system, ATPase component, at 1,067,503 to 1,068,276
_1056
EX28DRAFT_1057: EX28DRAFT_1057 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,068,286 to 1,069,173
_1057
Position (kb)
1066
1067
1068 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1065.802 kb on - strand, within EX28DRAFT_1053 at 1066.023 kb on - strand at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.170 kb on + strand, within EX28DRAFT_1054 at 1066.171 kb on - strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.276 kb on - strand, within EX28DRAFT_1054 at 1066.507 kb on - strand, within EX28DRAFT_1054 at 1066.572 kb on - strand at 1066.935 kb on + strand, within EX28DRAFT_1055 at 1067.073 kb on + strand, within EX28DRAFT_1055 at 1067.076 kb on - strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.259 kb on + strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.260 kb on - strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.286 kb on + strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.287 kb on - strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.304 kb on + strand, within EX28DRAFT_1055 at 1067.305 kb on - strand, within EX28DRAFT_1055 at 1067.391 kb on + strand, within EX28DRAFT_1055 at 1067.392 kb on - strand, within EX28DRAFT_1055 at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.527 kb on - strand at 1067.695 kb on - strand, within EX28DRAFT_1056 at 1067.722 kb on + strand, within EX28DRAFT_1056 at 1068.224 kb on + strand at 1068.224 kb on + strand at 1068.281 kb on + strand at 1068.292 kb on + strand at 1068.292 kb on + strand at 1068.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,065,802 - EX28DRAFT_1053 0.72 +0.8 1,066,023 - -0.6 1,066,150 - EX28DRAFT_1054 0.15 +0.1 1,066,150 - EX28DRAFT_1054 0.15 -0.0 1,066,150 - EX28DRAFT_1054 0.15 -1.6 1,066,170 + EX28DRAFT_1054 0.19 +0.3 1,066,171 - EX28DRAFT_1054 0.19 -0.2 1,066,209 + EX28DRAFT_1054 0.26 -2.5 1,066,209 + EX28DRAFT_1054 0.26 +0.4 1,066,276 - EX28DRAFT_1054 0.40 +0.1 1,066,507 - EX28DRAFT_1054 0.85 +0.2 1,066,572 - +0.5 1,066,935 + EX28DRAFT_1055 0.37 -0.1 1,067,073 + EX28DRAFT_1055 0.52 +1.5 1,067,076 - EX28DRAFT_1055 0.52 +0.1 1,067,259 + EX28DRAFT_1055 0.72 -0.7 1,067,259 + EX28DRAFT_1055 0.72 -0.9 1,067,260 - EX28DRAFT_1055 0.72 -0.1 1,067,260 - EX28DRAFT_1055 0.72 +0.1 1,067,260 - EX28DRAFT_1055 0.72 -0.2 1,067,286 + EX28DRAFT_1055 0.75 +0.1 1,067,286 + EX28DRAFT_1055 0.75 -0.3 1,067,286 + EX28DRAFT_1055 0.75 +0.2 1,067,287 - EX28DRAFT_1055 0.75 -0.6 1,067,287 - EX28DRAFT_1055 0.75 -1.8 1,067,287 - EX28DRAFT_1055 0.75 +0.1 1,067,287 - EX28DRAFT_1055 0.75 -0.0 1,067,304 + EX28DRAFT_1055 0.77 -1.9 1,067,304 + EX28DRAFT_1055 0.77 -0.3 1,067,304 + EX28DRAFT_1055 0.77 -0.1 1,067,305 - EX28DRAFT_1055 0.77 -0.5 1,067,391 + EX28DRAFT_1055 0.86 -0.2 1,067,392 - EX28DRAFT_1055 0.86 +1.2 1,067,527 - -0.8 1,067,527 - +0.7 1,067,527 - +1.8 1,067,527 - +0.3 1,067,695 - EX28DRAFT_1056 0.25 +1.0 1,067,722 + EX28DRAFT_1056 0.28 +0.1 1,068,224 + +0.1 1,068,224 + +0.1 1,068,281 + +0.6 1,068,292 + +0.1 1,068,292 + -0.6 1,068,293 - -0.1
Or see this region's nucleotide sequence