Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1046 and EX28DRAFT_1047 are separated by 112 nucleotides EX28DRAFT_1047 and EX28DRAFT_1048 overlap by 4 nucleotides EX28DRAFT_1048 and EX28DRAFT_1049 are separated by 345 nucleotides EX28DRAFT_1049 and EX28DRAFT_1050 are separated by 110 nucleotides
EX28DRAFT_1046: EX28DRAFT_1046 - Transcriptional regulator, at 1,057,730 to 1,058,626
_1046
EX28DRAFT_1047: EX28DRAFT_1047 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 1,058,739 to 1,059,137
_1047
EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669
_1048
EX28DRAFT_1049: EX28DRAFT_1049 - Adenylate kinase and related kinases, at 1,061,015 to 1,061,554
_1049
EX28DRAFT_1050: EX28DRAFT_1050 - luciferase family oxidoreductase, group 1, at 1,061,665 to 1,062,666
_1050
Position (kb)
1059
1060
1061 Strain fitness (log2 ratio)
-2
-1
0
1 at 1058.164 kb on + strand, within EX28DRAFT_1046 at 1058.165 kb on - strand, within EX28DRAFT_1046 at 1058.193 kb on - strand, within EX28DRAFT_1046 at 1058.240 kb on + strand, within EX28DRAFT_1046 at 1058.241 kb on - strand, within EX28DRAFT_1046 at 1058.585 kb on + strand at 1058.590 kb on + strand at 1058.591 kb on - strand at 1058.591 kb on - strand at 1058.621 kb on + strand at 1058.665 kb on + strand at 1058.735 kb on + strand at 1058.736 kb on - strand at 1058.736 kb on - strand at 1058.764 kb on + strand at 1058.765 kb on - strand at 1058.897 kb on + strand, within EX28DRAFT_1047 at 1058.947 kb on + strand, within EX28DRAFT_1047 at 1058.948 kb on - strand, within EX28DRAFT_1047 at 1058.975 kb on - strand, within EX28DRAFT_1047 at 1059.355 kb on + strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.970 kb on - strand, within EX28DRAFT_1048 at 1060.051 kb on - strand, within EX28DRAFT_1048 at 1060.051 kb on - strand, within EX28DRAFT_1048 at 1060.112 kb on + strand, within EX28DRAFT_1048 at 1060.189 kb on + strand, within EX28DRAFT_1048 at 1060.267 kb on + strand, within EX28DRAFT_1048 at 1060.558 kb on + strand at 1060.571 kb on - strand at 1060.576 kb on - strand at 1060.581 kb on - strand at 1060.632 kb on - strand at 1061.000 kb on + strand at 1061.001 kb on - strand at 1061.097 kb on - strand, within EX28DRAFT_1049 at 1061.118 kb on - strand, within EX28DRAFT_1049 at 1061.216 kb on + strand, within EX28DRAFT_1049 at 1061.217 kb on - strand, within EX28DRAFT_1049 at 1061.332 kb on + strand, within EX28DRAFT_1049 at 1061.333 kb on - strand, within EX28DRAFT_1049 at 1061.482 kb on + strand, within EX28DRAFT_1049 at 1061.538 kb on + strand at 1061.539 kb on - strand at 1061.539 kb on - strand at 1061.546 kb on + strand at 1061.553 kb on - strand at 1061.553 kb on - strand at 1061.563 kb on + strand at 1061.563 kb on + strand at 1061.563 kb on + strand at 1061.564 kb on - strand at 1061.564 kb on - strand at 1061.565 kb on + strand at 1061.565 kb on + strand at 1061.568 kb on - strand at 1061.586 kb on + strand at 1061.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,058,164 + EX28DRAFT_1046 0.48 -0.6 1,058,165 - EX28DRAFT_1046 0.48 +1.0 1,058,193 - EX28DRAFT_1046 0.52 +0.2 1,058,240 + EX28DRAFT_1046 0.57 +0.5 1,058,241 - EX28DRAFT_1046 0.57 +0.7 1,058,585 + -1.2 1,058,590 + +0.5 1,058,591 - +0.0 1,058,591 - +0.5 1,058,621 + +0.6 1,058,665 + -0.3 1,058,735 + -1.9 1,058,736 - -0.0 1,058,736 - -0.9 1,058,764 + -0.6 1,058,765 - +0.6 1,058,897 + EX28DRAFT_1047 0.40 -0.3 1,058,947 + EX28DRAFT_1047 0.52 -0.1 1,058,948 - EX28DRAFT_1047 0.52 -0.6 1,058,975 - EX28DRAFT_1047 0.59 -0.1 1,059,355 + EX28DRAFT_1048 0.14 +1.2 1,059,558 - EX28DRAFT_1048 0.28 +0.7 1,059,558 - EX28DRAFT_1048 0.28 +0.3 1,059,558 - EX28DRAFT_1048 0.28 +0.3 1,059,970 - EX28DRAFT_1048 0.54 -0.1 1,060,051 - EX28DRAFT_1048 0.60 -0.7 1,060,051 - EX28DRAFT_1048 0.60 -0.2 1,060,112 + EX28DRAFT_1048 0.64 +0.2 1,060,189 + EX28DRAFT_1048 0.69 +1.4 1,060,267 + EX28DRAFT_1048 0.74 -0.0 1,060,558 + +0.3 1,060,571 - -0.7 1,060,576 - +0.5 1,060,581 - +1.6 1,060,632 - +0.3 1,061,000 + -0.1 1,061,001 - -1.2 1,061,097 - EX28DRAFT_1049 0.15 -0.4 1,061,118 - EX28DRAFT_1049 0.19 -0.3 1,061,216 + EX28DRAFT_1049 0.37 -0.0 1,061,217 - EX28DRAFT_1049 0.37 +0.2 1,061,332 + EX28DRAFT_1049 0.59 -1.0 1,061,333 - EX28DRAFT_1049 0.59 -0.6 1,061,482 + EX28DRAFT_1049 0.86 +0.2 1,061,538 + -0.2 1,061,539 - -0.2 1,061,539 - +1.0 1,061,546 + -0.3 1,061,553 - +0.4 1,061,553 - -0.5 1,061,563 + -0.8 1,061,563 + -0.2 1,061,563 + -2.6 1,061,564 - +0.1 1,061,564 - -0.2 1,061,565 + -0.6 1,061,565 + +0.7 1,061,568 - +0.4 1,061,586 + +1.1 1,061,628 - +0.9
Or see this region's nucleotide sequence