Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1045

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1044 and EX28DRAFT_1045 are separated by 51 nucleotidesEX28DRAFT_1045 and EX28DRAFT_1046 are separated by 322 nucleotides EX28DRAFT_1044: EX28DRAFT_1044 - 40-residue YVTN family beta-propeller repeat, at 1,054,798 to 1,055,859 _1044 EX28DRAFT_1045: EX28DRAFT_1045 - Gamma-aminobutyrate permease and related permeases, at 1,055,911 to 1,057,407 _1045 EX28DRAFT_1046: EX28DRAFT_1046 - Transcriptional regulator, at 1,057,730 to 1,058,626 _1046 Position (kb) 1055 1056 1057 1058Strain fitness (log2 ratio) -1 0 1at 1055.263 kb on + strand, within EX28DRAFT_1044at 1055.263 kb on + strand, within EX28DRAFT_1044at 1055.263 kb on + strand, within EX28DRAFT_1044at 1055.353 kb on + strand, within EX28DRAFT_1044at 1055.353 kb on + strand, within EX28DRAFT_1044at 1055.353 kb on + strand, within EX28DRAFT_1044at 1055.353 kb on + strand, within EX28DRAFT_1044at 1055.495 kb on - strand, within EX28DRAFT_1044at 1055.656 kb on + strand, within EX28DRAFT_1044at 1055.657 kb on - strand, within EX28DRAFT_1044at 1055.657 kb on - strand, within EX28DRAFT_1044at 1055.707 kb on + strand, within EX28DRAFT_1044at 1055.783 kb on - strandat 1055.805 kb on + strandat 1055.857 kb on + strandat 1056.062 kb on + strand, within EX28DRAFT_1045at 1056.062 kb on + strand, within EX28DRAFT_1045at 1056.062 kb on + strand, within EX28DRAFT_1045at 1056.062 kb on + strand, within EX28DRAFT_1045at 1056.063 kb on - strand, within EX28DRAFT_1045at 1056.063 kb on - strand, within EX28DRAFT_1045at 1056.066 kb on + strand, within EX28DRAFT_1045at 1056.067 kb on - strand, within EX28DRAFT_1045at 1056.296 kb on + strand, within EX28DRAFT_1045at 1056.296 kb on + strand, within EX28DRAFT_1045at 1056.296 kb on + strand, within EX28DRAFT_1045at 1056.297 kb on - strand, within EX28DRAFT_1045at 1056.307 kb on + strand, within EX28DRAFT_1045at 1056.316 kb on + strand, within EX28DRAFT_1045at 1056.316 kb on + strand, within EX28DRAFT_1045at 1056.320 kb on + strand, within EX28DRAFT_1045at 1056.321 kb on - strand, within EX28DRAFT_1045at 1056.437 kb on + strand, within EX28DRAFT_1045at 1056.438 kb on - strand, within EX28DRAFT_1045at 1056.503 kb on + strand, within EX28DRAFT_1045at 1056.504 kb on - strand, within EX28DRAFT_1045at 1056.504 kb on - strand, within EX28DRAFT_1045at 1056.508 kb on + strand, within EX28DRAFT_1045at 1056.558 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1056.670 kb on - strand, within EX28DRAFT_1045at 1057.012 kb on - strand, within EX28DRAFT_1045at 1057.012 kb on - strand, within EX28DRAFT_1045at 1057.012 kb on - strand, within EX28DRAFT_1045at 1057.014 kb on - strand, within EX28DRAFT_1045at 1057.014 kb on - strand, within EX28DRAFT_1045at 1057.067 kb on + strand, within EX28DRAFT_1045at 1057.068 kb on - strand, within EX28DRAFT_1045at 1057.085 kb on + strand, within EX28DRAFT_1045at 1057.119 kb on - strand, within EX28DRAFT_1045at 1057.209 kb on - strand, within EX28DRAFT_1045at 1057.445 kb on + strandat 1057.804 kb on - strandat 1057.900 kb on - strand, within EX28DRAFT_1046at 1058.017 kb on - strand, within EX28DRAFT_1046at 1058.106 kb on + strand, within EX28DRAFT_1046at 1058.113 kb on + strand, within EX28DRAFT_1046at 1058.164 kb on + strand, within EX28DRAFT_1046at 1058.165 kb on - strand, within EX28DRAFT_1046at 1058.193 kb on - strand, within EX28DRAFT_1046at 1058.240 kb on + strand, within EX28DRAFT_1046at 1058.241 kb on - strand, within EX28DRAFT_1046

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,055,263 + EX28DRAFT_1044 0.44 +1.6
1,055,263 + EX28DRAFT_1044 0.44 -0.6
1,055,263 + EX28DRAFT_1044 0.44 -0.4
1,055,353 + EX28DRAFT_1044 0.52 -0.5
1,055,353 + EX28DRAFT_1044 0.52 -0.8
1,055,353 + EX28DRAFT_1044 0.52 +1.6
1,055,353 + EX28DRAFT_1044 0.52 -0.2
1,055,495 - EX28DRAFT_1044 0.66 +0.8
1,055,656 + EX28DRAFT_1044 0.81 -0.1
1,055,657 - EX28DRAFT_1044 0.81 +1.0
1,055,657 - EX28DRAFT_1044 0.81 -0.3
1,055,707 + EX28DRAFT_1044 0.86 +0.0
1,055,783 - -0.7
1,055,805 + +0.2
1,055,857 + +0.4
1,056,062 + EX28DRAFT_1045 0.10 -1.5
1,056,062 + EX28DRAFT_1045 0.10 +0.2
1,056,062 + EX28DRAFT_1045 0.10 -0.5
1,056,062 + EX28DRAFT_1045 0.10 -0.5
1,056,063 - EX28DRAFT_1045 0.10 -0.2
1,056,063 - EX28DRAFT_1045 0.10 -0.7
1,056,066 + EX28DRAFT_1045 0.10 -0.9
1,056,067 - EX28DRAFT_1045 0.10 -0.9
1,056,296 + EX28DRAFT_1045 0.26 +0.1
1,056,296 + EX28DRAFT_1045 0.26 +0.1
1,056,296 + EX28DRAFT_1045 0.26 -0.0
1,056,297 - EX28DRAFT_1045 0.26 +0.1
1,056,307 + EX28DRAFT_1045 0.26 +1.4
1,056,316 + EX28DRAFT_1045 0.27 +0.0
1,056,316 + EX28DRAFT_1045 0.27 +0.3
1,056,320 + EX28DRAFT_1045 0.27 +0.4
1,056,321 - EX28DRAFT_1045 0.27 +0.9
1,056,437 + EX28DRAFT_1045 0.35 -0.1
1,056,438 - EX28DRAFT_1045 0.35 -1.0
1,056,503 + EX28DRAFT_1045 0.40 +0.6
1,056,504 - EX28DRAFT_1045 0.40 -0.3
1,056,504 - EX28DRAFT_1045 0.40 -0.5
1,056,508 + EX28DRAFT_1045 0.40 +0.3
1,056,558 - EX28DRAFT_1045 0.43 -0.3
1,056,670 - EX28DRAFT_1045 0.51 +0.0
1,056,670 - EX28DRAFT_1045 0.51 -0.1
1,056,670 - EX28DRAFT_1045 0.51 -1.2
1,056,670 - EX28DRAFT_1045 0.51 -0.3
1,056,670 - EX28DRAFT_1045 0.51 -0.1
1,056,670 - EX28DRAFT_1045 0.51 -0.3
1,057,012 - EX28DRAFT_1045 0.74 +1.3
1,057,012 - EX28DRAFT_1045 0.74 -0.8
1,057,012 - EX28DRAFT_1045 0.74 -0.2
1,057,014 - EX28DRAFT_1045 0.74 -0.2
1,057,014 - EX28DRAFT_1045 0.74 +0.4
1,057,067 + EX28DRAFT_1045 0.77 -1.0
1,057,068 - EX28DRAFT_1045 0.77 -0.2
1,057,085 + EX28DRAFT_1045 0.78 +0.3
1,057,119 - EX28DRAFT_1045 0.81 -0.7
1,057,209 - EX28DRAFT_1045 0.87 -0.7
1,057,445 + -0.2
1,057,804 - +0.1
1,057,900 - EX28DRAFT_1046 0.19 +0.2
1,058,017 - EX28DRAFT_1046 0.32 -0.5
1,058,106 + EX28DRAFT_1046 0.42 +0.7
1,058,113 + EX28DRAFT_1046 0.43 -0.3
1,058,164 + EX28DRAFT_1046 0.48 -0.6
1,058,165 - EX28DRAFT_1046 0.48 +1.0
1,058,193 - EX28DRAFT_1046 0.52 +0.2
1,058,240 + EX28DRAFT_1046 0.57 +0.5
1,058,241 - EX28DRAFT_1046 0.57 +0.7

Or see this region's nucleotide sequence