Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1034 and EX28DRAFT_1035 are separated by 4 nucleotides EX28DRAFT_1035 and EX28DRAFT_1036 are separated by 283 nucleotides
EX28DRAFT_1034: EX28DRAFT_1034 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,042,063 to 1,045,044
_1034
EX28DRAFT_1035: EX28DRAFT_1035 - hypothetical protein, at 1,045,049 to 1,046,389
_1035
EX28DRAFT_1036: EX28DRAFT_1036 - ABC-type dipeptide transport system, periplasmic component, at 1,046,673 to 1,048,271
_1036
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1044.265 kb on - strand, within EX28DRAFT_1034 at 1044.337 kb on - strand, within EX28DRAFT_1034 at 1044.476 kb on + strand, within EX28DRAFT_1034 at 1044.660 kb on + strand, within EX28DRAFT_1034 at 1044.660 kb on + strand, within EX28DRAFT_1034 at 1044.661 kb on - strand, within EX28DRAFT_1034 at 1044.867 kb on + strand at 1044.867 kb on + strand at 1044.869 kb on + strand at 1044.929 kb on - strand at 1045.002 kb on + strand at 1045.021 kb on - strand at 1045.022 kb on + strand at 1045.022 kb on + strand at 1045.044 kb on + strand at 1045.045 kb on - strand at 1045.045 kb on - strand at 1045.138 kb on + strand at 1045.201 kb on + strand, within EX28DRAFT_1035 at 1045.253 kb on + strand, within EX28DRAFT_1035 at 1045.253 kb on + strand, within EX28DRAFT_1035 at 1045.254 kb on - strand, within EX28DRAFT_1035 at 1045.291 kb on + strand, within EX28DRAFT_1035 at 1045.292 kb on - strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.771 kb on - strand, within EX28DRAFT_1035 at 1046.183 kb on + strand, within EX28DRAFT_1035 at 1046.206 kb on - strand, within EX28DRAFT_1035 at 1046.245 kb on + strand, within EX28DRAFT_1035 at 1046.402 kb on + strand at 1046.402 kb on + strand at 1046.403 kb on - strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.581 kb on - strand at 1046.593 kb on + strand at 1046.633 kb on + strand at 1046.634 kb on - strand at 1046.644 kb on + strand at 1046.644 kb on + strand at 1046.645 kb on - strand at 1046.645 kb on - strand at 1046.646 kb on + strand at 1046.646 kb on + strand at 1046.647 kb on - strand at 1046.648 kb on + strand at 1046.649 kb on - strand at 1046.669 kb on - strand at 1046.678 kb on + strand at 1046.679 kb on - strand at 1046.759 kb on + strand at 1046.760 kb on - strand at 1046.763 kb on + strand at 1046.763 kb on + strand at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.938 kb on - strand, within EX28DRAFT_1036 at 1046.938 kb on - strand, within EX28DRAFT_1036 at 1046.939 kb on + strand, within EX28DRAFT_1036 at 1046.940 kb on - strand, within EX28DRAFT_1036 at 1046.978 kb on + strand, within EX28DRAFT_1036 at 1047.019 kb on + strand, within EX28DRAFT_1036 at 1047.020 kb on + strand, within EX28DRAFT_1036 at 1047.084 kb on + strand, within EX28DRAFT_1036 at 1047.084 kb on + strand, within EX28DRAFT_1036 at 1047.085 kb on - strand, within EX28DRAFT_1036 at 1047.090 kb on + strand, within EX28DRAFT_1036 at 1047.114 kb on - strand, within EX28DRAFT_1036 at 1047.303 kb on + strand, within EX28DRAFT_1036 at 1047.303 kb on + strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.319 kb on - strand, within EX28DRAFT_1036 at 1047.360 kb on + strand, within EX28DRAFT_1036
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,044,265 - EX28DRAFT_1034 0.74 +0.6 1,044,337 - EX28DRAFT_1034 0.76 -0.5 1,044,476 + EX28DRAFT_1034 0.81 +1.4 1,044,660 + EX28DRAFT_1034 0.87 -0.7 1,044,660 + EX28DRAFT_1034 0.87 -2.4 1,044,661 - EX28DRAFT_1034 0.87 -1.7 1,044,867 + -2.6 1,044,867 + -0.5 1,044,869 + -1.2 1,044,929 - -0.0 1,045,002 + +0.6 1,045,021 - -0.4 1,045,022 + -0.3 1,045,022 + +0.3 1,045,044 + +0.4 1,045,045 - -1.3 1,045,045 - -0.3 1,045,138 + -1.6 1,045,201 + EX28DRAFT_1035 0.11 +0.3 1,045,253 + EX28DRAFT_1035 0.15 -0.0 1,045,253 + EX28DRAFT_1035 0.15 -0.8 1,045,254 - EX28DRAFT_1035 0.15 -2.2 1,045,291 + EX28DRAFT_1035 0.18 +1.5 1,045,292 - EX28DRAFT_1035 0.18 -0.4 1,045,770 + EX28DRAFT_1035 0.54 +1.2 1,045,770 + EX28DRAFT_1035 0.54 -0.7 1,045,770 + EX28DRAFT_1035 0.54 +0.2 1,045,770 + EX28DRAFT_1035 0.54 -0.6 1,045,770 + EX28DRAFT_1035 0.54 -0.2 1,045,771 - EX28DRAFT_1035 0.54 -0.2 1,046,183 + EX28DRAFT_1035 0.85 +0.6 1,046,206 - EX28DRAFT_1035 0.86 -1.7 1,046,245 + EX28DRAFT_1035 0.89 -0.4 1,046,402 + +0.5 1,046,402 + +0.5 1,046,403 - +0.2 1,046,404 + -4.0 1,046,404 + -0.9 1,046,404 + -4.1 1,046,404 + -0.5 1,046,404 + +0.5 1,046,405 - -1.7 1,046,405 - -0.2 1,046,405 - -0.4 1,046,405 - -0.9 1,046,405 - +0.8 1,046,405 - -0.5 1,046,581 - -0.6 1,046,593 + -0.7 1,046,633 + -0.6 1,046,634 - -0.4 1,046,644 + -0.1 1,046,644 + +0.2 1,046,645 - +0.0 1,046,645 - -1.1 1,046,646 + -0.5 1,046,646 + -0.0 1,046,647 - -0.8 1,046,648 + -0.7 1,046,649 - -0.0 1,046,669 - +0.1 1,046,678 + +0.3 1,046,679 - -0.7 1,046,759 + +0.6 1,046,760 - -0.1 1,046,763 + +0.2 1,046,763 + -0.0 1,046,937 + EX28DRAFT_1036 0.17 -0.5 1,046,937 + EX28DRAFT_1036 0.17 +2.0 1,046,937 + EX28DRAFT_1036 0.17 -0.8 1,046,937 + EX28DRAFT_1036 0.17 -0.6 1,046,938 - EX28DRAFT_1036 0.17 +0.3 1,046,938 - EX28DRAFT_1036 0.17 -0.4 1,046,939 + EX28DRAFT_1036 0.17 -0.5 1,046,940 - EX28DRAFT_1036 0.17 -0.1 1,046,978 + EX28DRAFT_1036 0.19 -1.9 1,047,019 + EX28DRAFT_1036 0.22 +0.4 1,047,020 + EX28DRAFT_1036 0.22 +0.0 1,047,084 + EX28DRAFT_1036 0.26 -1.1 1,047,084 + EX28DRAFT_1036 0.26 -0.1 1,047,085 - EX28DRAFT_1036 0.26 -0.2 1,047,090 + EX28DRAFT_1036 0.26 -0.2 1,047,114 - EX28DRAFT_1036 0.28 -0.0 1,047,303 + EX28DRAFT_1036 0.39 -0.0 1,047,303 + EX28DRAFT_1036 0.39 +0.7 1,047,304 - EX28DRAFT_1036 0.39 -0.1 1,047,304 - EX28DRAFT_1036 0.39 +0.5 1,047,304 - EX28DRAFT_1036 0.39 -2.1 1,047,319 - EX28DRAFT_1036 0.40 -0.7 1,047,360 + EX28DRAFT_1036 0.43 -0.9
Or see this region's nucleotide sequence