Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0981 and EX28DRAFT_0982 are separated by 22 nucleotides EX28DRAFT_0982 and EX28DRAFT_0983 overlap by 14 nucleotides EX28DRAFT_0983 and EX28DRAFT_0984 are separated by 28 nucleotides
EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349
_0981
EX28DRAFT_0982: EX28DRAFT_0982 - ABC-type sugar transport systems, permease components, at 983,372 to 984,253
_0982
EX28DRAFT_0983: EX28DRAFT_0983 - ABC-type sugar transport system, permease component, at 984,240 to 985,082
_0983
EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163
_0984
Position (kb) 984
985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.496 kb on + strand, within EX28DRAFT_0982 at 983.545 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.550 kb on - strand, within EX28DRAFT_0982 at 983.550 kb on - strand, within EX28DRAFT_0982 at 983.717 kb on + strand, within EX28DRAFT_0982 at 983.717 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.757 kb on - strand, within EX28DRAFT_0982 at 983.790 kb on - strand, within EX28DRAFT_0982 at 983.941 kb on + strand, within EX28DRAFT_0982 at 984.068 kb on + strand, within EX28DRAFT_0982 at 984.109 kb on + strand, within EX28DRAFT_0982 at 984.109 kb on + strand, within EX28DRAFT_0982 at 984.259 kb on + strand at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.674 kb on - strand, within EX28DRAFT_0983 at 984.729 kb on + strand, within EX28DRAFT_0983 at 984.963 kb on + strand, within EX28DRAFT_0983 at 984.965 kb on + strand, within EX28DRAFT_0983 at 985.023 kb on + strand at 985.024 kb on - strand at 985.359 kb on + strand, within EX28DRAFT_0984 at 985.405 kb on + strand, within EX28DRAFT_0984 at 985.406 kb on - strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.478 kb on - strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.489 kb on - strand, within EX28DRAFT_0984 at 985.528 kb on + strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.877 kb on + strand, within EX28DRAFT_0984 at 985.878 kb on - strand, within EX28DRAFT_0984 at 986.045 kb on - strand, within EX28DRAFT_0984
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 983,496 + EX28DRAFT_0982 0.14 +2.0 983,545 + EX28DRAFT_0982 0.20 -0.4 983,549 + EX28DRAFT_0982 0.20 +0.1 983,549 + EX28DRAFT_0982 0.20 +0.1 983,549 + EX28DRAFT_0982 0.20 -1.2 983,550 - EX28DRAFT_0982 0.20 -0.8 983,550 - EX28DRAFT_0982 0.20 -0.6 983,717 + EX28DRAFT_0982 0.39 +0.0 983,717 + EX28DRAFT_0982 0.39 -0.4 983,756 + EX28DRAFT_0982 0.44 +0.5 983,756 + EX28DRAFT_0982 0.44 -1.1 983,756 + EX28DRAFT_0982 0.44 +0.9 983,756 + EX28DRAFT_0982 0.44 +0.2 983,757 - EX28DRAFT_0982 0.44 +0.2 983,790 - EX28DRAFT_0982 0.47 -2.0 983,941 + EX28DRAFT_0982 0.65 +2.2 984,068 + EX28DRAFT_0982 0.79 -0.4 984,109 + EX28DRAFT_0982 0.84 +0.2 984,109 + EX28DRAFT_0982 0.84 -0.5 984,259 + -0.0 984,414 + EX28DRAFT_0983 0.21 +0.2 984,414 + EX28DRAFT_0983 0.21 +0.7 984,592 - EX28DRAFT_0983 0.42 -0.3 984,592 - EX28DRAFT_0983 0.42 +0.3 984,655 - EX28DRAFT_0983 0.49 -0.3 984,655 - EX28DRAFT_0983 0.49 -1.0 984,673 + EX28DRAFT_0983 0.51 +0.5 984,673 + EX28DRAFT_0983 0.51 -0.3 984,674 - EX28DRAFT_0983 0.51 +0.2 984,729 + EX28DRAFT_0983 0.58 -0.6 984,963 + EX28DRAFT_0983 0.86 +0.5 984,965 + EX28DRAFT_0983 0.86 +0.8 985,023 + +1.2 985,024 - -1.9 985,359 + EX28DRAFT_0984 0.24 +0.1 985,405 + EX28DRAFT_0984 0.28 +2.0 985,406 - EX28DRAFT_0984 0.28 -0.8 985,477 + EX28DRAFT_0984 0.35 +0.1 985,477 + EX28DRAFT_0984 0.35 -0.5 985,478 - EX28DRAFT_0984 0.35 +0.1 985,488 + EX28DRAFT_0984 0.36 -0.2 985,488 + EX28DRAFT_0984 0.36 -0.6 985,489 - EX28DRAFT_0984 0.36 +0.1 985,528 + EX28DRAFT_0984 0.40 +0.1 985,874 - EX28DRAFT_0984 0.72 +0.1 985,874 - EX28DRAFT_0984 0.72 +0.6 985,877 + EX28DRAFT_0984 0.73 +0.3 985,878 - EX28DRAFT_0984 0.73 -0.5 986,045 - EX28DRAFT_0984 0.89 +0.1
Or see this region's nucleotide sequence