Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0964

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0963 and EX28DRAFT_0964 are separated by 270 nucleotidesEX28DRAFT_0964 and EX28DRAFT_0965 are separated by 4 nucleotides EX28DRAFT_0963: EX28DRAFT_0963 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 963,395 to 964,183 _0963 EX28DRAFT_0964: EX28DRAFT_0964 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 964,454 to 967,549 _0964 EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465 _0965 Position (kb) 964 965 966 967 968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 964.390 kb on + strandat 964.391 kb on - strandat 964.451 kb on + strandat 964.452 kb on - strandat 964.495 kb on + strandat 964.915 kb on + strand, within EX28DRAFT_0964at 964.915 kb on + strand, within EX28DRAFT_0964at 965.019 kb on - strand, within EX28DRAFT_0964at 965.169 kb on - strand, within EX28DRAFT_0964at 965.214 kb on - strand, within EX28DRAFT_0964at 965.214 kb on - strand, within EX28DRAFT_0964at 965.284 kb on + strand, within EX28DRAFT_0964at 965.285 kb on - strand, within EX28DRAFT_0964at 965.285 kb on - strand, within EX28DRAFT_0964at 965.299 kb on - strand, within EX28DRAFT_0964at 965.418 kb on - strand, within EX28DRAFT_0964at 965.418 kb on - strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.731 kb on + strand, within EX28DRAFT_0964at 965.732 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.844 kb on + strand, within EX28DRAFT_0964at 965.845 kb on - strand, within EX28DRAFT_0964at 965.845 kb on - strand, within EX28DRAFT_0964at 965.923 kb on - strand, within EX28DRAFT_0964at 966.063 kb on - strand, within EX28DRAFT_0964at 966.117 kb on - strand, within EX28DRAFT_0964at 966.136 kb on + strand, within EX28DRAFT_0964at 966.137 kb on - strand, within EX28DRAFT_0964at 966.399 kb on - strand, within EX28DRAFT_0964at 966.399 kb on - strand, within EX28DRAFT_0964at 966.487 kb on + strand, within EX28DRAFT_0964at 967.080 kb on + strand, within EX28DRAFT_0964at 967.080 kb on + strand, within EX28DRAFT_0964at 967.081 kb on - strand, within EX28DRAFT_0964at 967.088 kb on + strand, within EX28DRAFT_0964at 967.089 kb on - strand, within EX28DRAFT_0964at 967.168 kb on + strand, within EX28DRAFT_0964at 967.169 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.217 kb on - strand, within EX28DRAFT_0964at 967.320 kb on + strandat 967.321 kb on - strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.417 kb on + strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.675 kb on + strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.695 kb on - strand, within EX28DRAFT_0965at 967.804 kb on - strand, within EX28DRAFT_0965at 967.811 kb on + strand, within EX28DRAFT_0965at 967.835 kb on - strand, within EX28DRAFT_0965at 967.874 kb on - strand, within EX28DRAFT_0965at 967.965 kb on + strand, within EX28DRAFT_0965at 968.048 kb on + strand, within EX28DRAFT_0965at 968.049 kb on - strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.138 kb on - strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.238 kb on - strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.257 kb on + strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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964,390 + +0.1
964,391 - -0.2
964,451 + +0.2
964,452 - -0.7
964,495 + -0.2
964,915 + EX28DRAFT_0964 0.15 -1.2
964,915 + EX28DRAFT_0964 0.15 +0.5
965,019 - EX28DRAFT_0964 0.18 -0.3
965,169 - EX28DRAFT_0964 0.23 +0.5
965,214 - EX28DRAFT_0964 0.25 +0.8
965,214 - EX28DRAFT_0964 0.25 +0.3
965,284 + EX28DRAFT_0964 0.27 -0.7
965,285 - EX28DRAFT_0964 0.27 -0.3
965,285 - EX28DRAFT_0964 0.27 -0.1
965,299 - EX28DRAFT_0964 0.27 +0.2
965,418 - EX28DRAFT_0964 0.31 -1.1
965,418 - EX28DRAFT_0964 0.31 +0.0
965,419 + EX28DRAFT_0964 0.31 -0.2
965,419 + EX28DRAFT_0964 0.31 -1.0
965,419 + EX28DRAFT_0964 0.31 +0.3
965,421 + EX28DRAFT_0964 0.31 +1.0
965,421 + EX28DRAFT_0964 0.31 +0.3
965,421 + EX28DRAFT_0964 0.31 +0.4
965,421 + EX28DRAFT_0964 0.31 -0.3
965,422 - EX28DRAFT_0964 0.31 -0.8
965,422 - EX28DRAFT_0964 0.31 +0.3
965,422 - EX28DRAFT_0964 0.31 -0.0
965,422 - EX28DRAFT_0964 0.31 -0.7
965,731 + EX28DRAFT_0964 0.41 +1.1
965,732 - EX28DRAFT_0964 0.41 -0.1
965,840 - EX28DRAFT_0964 0.45 +0.3
965,840 - EX28DRAFT_0964 0.45 +0.1
965,840 - EX28DRAFT_0964 0.45 -0.1
965,844 + EX28DRAFT_0964 0.45 -0.9
965,845 - EX28DRAFT_0964 0.45 -0.1
965,845 - EX28DRAFT_0964 0.45 -0.1
965,923 - EX28DRAFT_0964 0.47 +0.1
966,063 - EX28DRAFT_0964 0.52 -0.2
966,117 - EX28DRAFT_0964 0.54 -0.3
966,136 + EX28DRAFT_0964 0.54 -0.3
966,137 - EX28DRAFT_0964 0.54 -0.3
966,399 - EX28DRAFT_0964 0.63 -0.4
966,399 - EX28DRAFT_0964 0.63 -0.3
966,487 + EX28DRAFT_0964 0.66 +0.3
967,080 + EX28DRAFT_0964 0.85 +0.2
967,080 + EX28DRAFT_0964 0.85 -0.4
967,081 - EX28DRAFT_0964 0.85 +0.6
967,088 + EX28DRAFT_0964 0.85 +0.1
967,089 - EX28DRAFT_0964 0.85 -4.1
967,168 + EX28DRAFT_0964 0.88 +0.3
967,169 - EX28DRAFT_0964 0.88 +0.3
967,197 - EX28DRAFT_0964 0.89 +0.9
967,197 - EX28DRAFT_0964 0.89 +2.0
967,217 - EX28DRAFT_0964 0.89 -2.0
967,320 + -0.3
967,321 - -0.1
967,330 + -0.9
967,330 + +0.7
967,330 + -0.1
967,330 + -0.6
967,375 + +0.1
967,375 + +0.5
967,375 + -2.0
967,417 + -1.3
967,567 - -0.6
967,567 - +0.2
967,567 - +0.5
967,675 + EX28DRAFT_0965 0.13 +1.6
967,676 - EX28DRAFT_0965 0.13 +0.2
967,676 - EX28DRAFT_0965 0.13 +1.0
967,676 - EX28DRAFT_0965 0.13 +0.2
967,695 - EX28DRAFT_0965 0.15 +1.8
967,804 - EX28DRAFT_0965 0.27 -0.8
967,811 + EX28DRAFT_0965 0.28 +0.5
967,835 - EX28DRAFT_0965 0.31 +0.1
967,874 - EX28DRAFT_0965 0.35 +0.3
967,965 + EX28DRAFT_0965 0.45 +0.4
968,048 + EX28DRAFT_0965 0.54 -1.0
968,049 - EX28DRAFT_0965 0.54 +1.0
968,051 + EX28DRAFT_0965 0.54 -0.5
968,051 + EX28DRAFT_0965 0.54 -0.5
968,051 + EX28DRAFT_0965 0.54 +0.6
968,087 - EX28DRAFT_0965 0.58 +0.0
968,087 - EX28DRAFT_0965 0.58 -1.3
968,138 - EX28DRAFT_0965 0.64 -0.1
968,237 + EX28DRAFT_0965 0.75 -0.3
968,237 + EX28DRAFT_0965 0.75 +0.1
968,238 - EX28DRAFT_0965 0.75 +0.3
968,244 + EX28DRAFT_0965 0.76 -0.4
968,244 + EX28DRAFT_0965 0.76 +0.2
968,245 - EX28DRAFT_0965 0.76 +0.5
968,245 - EX28DRAFT_0965 0.76 +0.6
968,257 + EX28DRAFT_0965 0.77 +0.5
968,258 - EX28DRAFT_0965 0.77 +0.7
968,258 - EX28DRAFT_0965 0.77 +0.6

Or see this region's nucleotide sequence