Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0957 and EX28DRAFT_0958 are separated by 37 nucleotides EX28DRAFT_0958 and EX28DRAFT_0959 are separated by 166 nucleotides EX28DRAFT_0959 and EX28DRAFT_0960 overlap by 4 nucleotides
EX28DRAFT_0957: EX28DRAFT_0957 - transcriptional regulator, DeoR family, at 955,879 to 956,631
_0957
EX28DRAFT_0958: EX28DRAFT_0958 - hypothetical protein, at 956,669 to 956,884
_0958
EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920
_0959
EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908
_0960
Position (kb) 957
958 Strain fitness (log2 ratio) -1
0
1
2 at 956.194 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.341 kb on - strand, within EX28DRAFT_0957 at 956.424 kb on - strand, within EX28DRAFT_0957 at 956.496 kb on - strand, within EX28DRAFT_0957 at 956.559 kb on + strand at 956.631 kb on + strand at 956.631 kb on + strand at 956.632 kb on - strand at 956.632 kb on - strand at 956.642 kb on + strand at 956.940 kb on + strand at 956.955 kb on + strand at 956.956 kb on - strand at 957.050 kb on + strand at 957.051 kb on - strand at 957.051 kb on - strand at 957.060 kb on - strand at 957.071 kb on + strand at 957.123 kb on + strand at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.196 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.286 kb on - strand, within EX28DRAFT_0959 at 957.304 kb on + strand, within EX28DRAFT_0959 at 957.558 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.818 kb on - strand, within EX28DRAFT_0959 at 957.856 kb on - strand at 957.856 kb on - strand at 957.918 kb on + strand at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.136 kb on - strand, within EX28DRAFT_0960 at 958.300 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.528 kb on - strand, within EX28DRAFT_0960 at 958.534 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.862 kb on - strand, within EX28DRAFT_0960
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 956,194 + EX28DRAFT_0957 0.42 +0.6 956,276 + EX28DRAFT_0957 0.53 +0.2 956,276 + EX28DRAFT_0957 0.53 +0.7 956,276 + EX28DRAFT_0957 0.53 +0.3 956,276 + EX28DRAFT_0957 0.53 +0.0 956,276 + EX28DRAFT_0957 0.53 +0.6 956,341 - EX28DRAFT_0957 0.61 -0.3 956,424 - EX28DRAFT_0957 0.72 +0.1 956,496 - EX28DRAFT_0957 0.82 +0.0 956,559 + +1.1 956,631 + +0.1 956,631 + -0.6 956,632 - +0.3 956,632 - -0.5 956,642 + -0.5 956,940 + +0.2 956,955 + -0.0 956,956 - +0.1 957,050 + +0.4 957,051 - +0.4 957,051 - -1.5 957,060 - +0.0 957,071 + -0.4 957,123 + -0.4 957,194 - EX28DRAFT_0959 0.16 +0.0 957,194 - EX28DRAFT_0959 0.16 -0.2 957,196 + EX28DRAFT_0959 0.17 +0.5 957,285 + EX28DRAFT_0959 0.27 +0.2 957,285 + EX28DRAFT_0959 0.27 -0.0 957,285 + EX28DRAFT_0959 0.27 -0.2 957,285 + EX28DRAFT_0959 0.27 -1.5 957,286 - EX28DRAFT_0959 0.27 +0.3 957,304 + EX28DRAFT_0959 0.29 +1.0 957,558 + EX28DRAFT_0959 0.58 -0.2 957,609 + EX28DRAFT_0959 0.64 +1.1 957,609 + EX28DRAFT_0959 0.64 +0.0 957,610 - EX28DRAFT_0959 0.64 +0.5 957,610 - EX28DRAFT_0959 0.64 +2.5 957,610 - EX28DRAFT_0959 0.64 -0.0 957,687 + EX28DRAFT_0959 0.73 -1.0 957,687 + EX28DRAFT_0959 0.73 -0.1 957,818 - EX28DRAFT_0959 0.88 -0.1 957,856 - -0.2 957,856 - +0.2 957,918 + +0.1 958,127 - EX28DRAFT_0960 0.11 +0.4 958,127 - EX28DRAFT_0960 0.11 +0.9 958,136 - EX28DRAFT_0960 0.11 +0.2 958,300 + EX28DRAFT_0960 0.19 -0.8 958,338 + EX28DRAFT_0960 0.21 +0.6 958,338 + EX28DRAFT_0960 0.21 -0.2 958,371 - EX28DRAFT_0960 0.23 +0.3 958,371 - EX28DRAFT_0960 0.23 -0.2 958,528 - EX28DRAFT_0960 0.31 +0.8 958,534 + EX28DRAFT_0960 0.31 -0.3 958,764 + EX28DRAFT_0960 0.43 +0.7 958,764 + EX28DRAFT_0960 0.43 -0.3 958,851 + EX28DRAFT_0960 0.47 -0.1 958,851 + EX28DRAFT_0960 0.47 -0.4 958,852 - EX28DRAFT_0960 0.47 -0.3 958,852 - EX28DRAFT_0960 0.47 -0.3 958,862 - EX28DRAFT_0960 0.47 -0.4
Or see this region's nucleotide sequence