Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0935 and EX28DRAFT_0936 overlap by 1 nucleotides EX28DRAFT_0936 and EX28DRAFT_0937 are separated by 23 nucleotides EX28DRAFT_0937 and EX28DRAFT_0938 are separated by 148 nucleotides
EX28DRAFT_0935: EX28DRAFT_0935 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 934,057 to 935,652
_0935
EX28DRAFT_0936: EX28DRAFT_0936 - anthranilate synthase, component I (EC 4.1.3.27), at 935,652 to 937,214
_0936
EX28DRAFT_0937: EX28DRAFT_0937 - RNA, at 937,238 to 937,331
_0937
EX28DRAFT_0938: EX28DRAFT_0938 - Predicted metal-dependent phosphoesterases (PHP family), at 937,480 to 938,373
_0938
Position (kb) 935
936
937
938 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 934.662 kb on + strand, within EX28DRAFT_0935 at 934.674 kb on + strand, within EX28DRAFT_0935 at 934.789 kb on - strand, within EX28DRAFT_0935 at 934.801 kb on - strand, within EX28DRAFT_0935 at 934.828 kb on - strand, within EX28DRAFT_0935 at 935.235 kb on + strand, within EX28DRAFT_0935 at 935.373 kb on - strand, within EX28DRAFT_0935 at 935.565 kb on + strand at 935.565 kb on + strand at 935.609 kb on + strand at 935.610 kb on - strand at 935.626 kb on - strand at 935.681 kb on + strand at 936.038 kb on - strand, within EX28DRAFT_0936 at 936.340 kb on + strand, within EX28DRAFT_0936 at 936.341 kb on - strand, within EX28DRAFT_0936 at 936.374 kb on - strand, within EX28DRAFT_0936 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.689 kb on - strand, within EX28DRAFT_0936 at 936.698 kb on - strand, within EX28DRAFT_0936 at 936.761 kb on - strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 936.911 kb on + strand, within EX28DRAFT_0936 at 937.360 kb on + strand at 937.386 kb on + strand at 937.391 kb on - strand at 937.395 kb on - strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.516 kb on - strand at 937.527 kb on - strand at 937.527 kb on - strand at 937.537 kb on - strand at 937.537 kb on - strand at 937.763 kb on + strand, within EX28DRAFT_0938 at 937.779 kb on + strand, within EX28DRAFT_0938 at 937.780 kb on - strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 938.006 kb on - strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.095 kb on + strand, within EX28DRAFT_0938 at 938.097 kb on + strand, within EX28DRAFT_0938 at 938.098 kb on - strand, within EX28DRAFT_0938
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 934,662 + EX28DRAFT_0935 0.38 -4.0 934,674 + EX28DRAFT_0935 0.39 -3.1 934,789 - EX28DRAFT_0935 0.46 -0.9 934,801 - EX28DRAFT_0935 0.47 -1.8 934,828 - EX28DRAFT_0935 0.48 -5.9 935,235 + EX28DRAFT_0935 0.74 -3.8 935,373 - EX28DRAFT_0935 0.82 -3.7 935,565 + -2.6 935,565 + -4.7 935,609 + -3.6 935,610 - -2.4 935,626 - -5.3 935,681 + -3.9 936,038 - EX28DRAFT_0936 0.25 -2.5 936,340 + EX28DRAFT_0936 0.44 -3.6 936,341 - EX28DRAFT_0936 0.44 -1.0 936,374 - EX28DRAFT_0936 0.46 -4.8 936,689 - EX28DRAFT_0936 0.66 -2.1 936,689 - EX28DRAFT_0936 0.66 -0.9 936,698 - EX28DRAFT_0936 0.67 -2.6 936,761 - EX28DRAFT_0936 0.71 -1.6 936,911 + EX28DRAFT_0936 0.81 -2.7 936,911 + EX28DRAFT_0936 0.81 -5.1 937,360 + -4.4 937,386 + -2.6 937,391 - -1.7 937,395 - -0.9 937,507 + -0.3 937,507 + +0.3 937,507 + +0.2 937,516 - -2.1 937,527 - +1.7 937,527 - +0.6 937,537 - +0.2 937,537 - +0.1 937,763 + EX28DRAFT_0938 0.32 +1.3 937,779 + EX28DRAFT_0938 0.33 -0.5 937,780 - EX28DRAFT_0938 0.34 -0.2 937,981 + EX28DRAFT_0938 0.56 +0.1 937,981 + EX28DRAFT_0938 0.56 +0.5 938,006 - EX28DRAFT_0938 0.59 -0.4 938,040 + EX28DRAFT_0938 0.63 -0.1 938,040 + EX28DRAFT_0938 0.63 -0.2 938,041 - EX28DRAFT_0938 0.63 -0.2 938,041 - EX28DRAFT_0938 0.63 -3.4 938,095 + EX28DRAFT_0938 0.69 +1.3 938,097 + EX28DRAFT_0938 0.69 +0.2 938,098 - EX28DRAFT_0938 0.69 -0.5
Or see this region's nucleotide sequence