Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0899 and EX28DRAFT_0900 overlap by 4 nucleotides EX28DRAFT_0900 and EX28DRAFT_0901 overlap by 26 nucleotides EX28DRAFT_0901 and EX28DRAFT_0902 overlap by 38 nucleotides EX28DRAFT_0902 and EX28DRAFT_0903 overlap by 8 nucleotides EX28DRAFT_0903 and EX28DRAFT_0904 are separated by 9 nucleotides
EX28DRAFT_0899: EX28DRAFT_0899 - Phage-related lysozyme (muraminidase), at 905,685 to 906,194
_0899
EX28DRAFT_0900: EX28DRAFT_0900 - phage lysis regulatory protein, LysB family, at 906,191 to 906,616
_0900
EX28DRAFT_0901: EX28DRAFT_0901 - hypothetical protein, at 906,591 to 906,749
_0901
EX28DRAFT_0902: EX28DRAFT_0902 - P2 phage tail completion protein R (GpR), at 906,712 to 907,179
_0902
EX28DRAFT_0903: EX28DRAFT_0903 - phage virion morphogenesis (putative tail completion) protein, at 907,172 to 907,624
_0903
EX28DRAFT_0904: EX28DRAFT_0904 - hypothetical protein, at 907,634 to 908,713
_0904
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1 at 905.763 kb on - strand, within EX28DRAFT_0899 at 906.115 kb on - strand, within EX28DRAFT_0899 at 906.390 kb on + strand, within EX28DRAFT_0900 at 906.485 kb on + strand, within EX28DRAFT_0900 at 906.558 kb on + strand, within EX28DRAFT_0900 at 906.637 kb on + strand, within EX28DRAFT_0901 at 906.638 kb on - strand, within EX28DRAFT_0901 at 906.638 kb on - strand, within EX28DRAFT_0901 at 907.085 kb on + strand, within EX28DRAFT_0902 at 907.090 kb on + strand, within EX28DRAFT_0902 at 907.091 kb on - strand, within EX28DRAFT_0902 at 907.091 kb on - strand, within EX28DRAFT_0902 at 907.091 kb on - strand, within EX28DRAFT_0902 at 907.141 kb on + strand at 907.142 kb on - strand at 907.142 kb on - strand at 907.142 kb on - strand at 907.143 kb on + strand at 907.184 kb on - strand at 907.294 kb on + strand, within EX28DRAFT_0903 at 907.295 kb on - strand, within EX28DRAFT_0903 at 907.381 kb on + strand, within EX28DRAFT_0903 at 907.484 kb on - strand, within EX28DRAFT_0903 at 907.525 kb on + strand, within EX28DRAFT_0903 at 907.529 kb on + strand, within EX28DRAFT_0903 at 907.529 kb on + strand, within EX28DRAFT_0903 at 907.530 kb on - strand, within EX28DRAFT_0903 at 907.530 kb on - strand, within EX28DRAFT_0903 at 907.530 kb on - strand, within EX28DRAFT_0903 at 907.533 kb on + strand, within EX28DRAFT_0903 at 907.533 kb on + strand, within EX28DRAFT_0903 at 907.569 kb on + strand, within EX28DRAFT_0903 at 907.569 kb on + strand, within EX28DRAFT_0903 at 907.897 kb on - strand, within EX28DRAFT_0904
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 905,763 - EX28DRAFT_0899 0.15 +0.5 906,115 - EX28DRAFT_0899 0.84 -2.6 906,390 + EX28DRAFT_0900 0.47 +0.1 906,485 + EX28DRAFT_0900 0.69 +1.3 906,558 + EX28DRAFT_0900 0.86 -0.0 906,637 + EX28DRAFT_0901 0.29 -0.9 906,638 - EX28DRAFT_0901 0.30 -0.7 906,638 - EX28DRAFT_0901 0.30 -1.1 907,085 + EX28DRAFT_0902 0.80 +0.1 907,090 + EX28DRAFT_0902 0.81 -0.1 907,091 - EX28DRAFT_0902 0.81 +0.2 907,091 - EX28DRAFT_0902 0.81 +0.3 907,091 - EX28DRAFT_0902 0.81 -0.1 907,141 + -0.8 907,142 - -0.1 907,142 - +0.1 907,142 - -0.2 907,143 + -0.2 907,184 - +0.2 907,294 + EX28DRAFT_0903 0.27 +0.0 907,295 - EX28DRAFT_0903 0.27 +0.2 907,381 + EX28DRAFT_0903 0.46 -0.3 907,484 - EX28DRAFT_0903 0.69 +1.4 907,525 + EX28DRAFT_0903 0.78 -0.6 907,529 + EX28DRAFT_0903 0.79 +0.2 907,529 + EX28DRAFT_0903 0.79 +0.2 907,530 - EX28DRAFT_0903 0.79 -1.4 907,530 - EX28DRAFT_0903 0.79 -0.1 907,530 - EX28DRAFT_0903 0.79 -0.2 907,533 + EX28DRAFT_0903 0.80 +0.1 907,533 + EX28DRAFT_0903 0.80 -1.0 907,569 + EX28DRAFT_0903 0.88 -0.4 907,569 + EX28DRAFT_0903 0.88 +0.2 907,897 - EX28DRAFT_0904 0.24 -0.3
Or see this region's nucleotide sequence