Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0895 and EX28DRAFT_0896 are separated by 99 nucleotides EX28DRAFT_0896 and EX28DRAFT_0897 overlap by 1 nucleotides EX28DRAFT_0897 and EX28DRAFT_0898 overlap by 10 nucleotides EX28DRAFT_0898 and EX28DRAFT_0899 overlap by 17 nucleotides EX28DRAFT_0899 and EX28DRAFT_0900 overlap by 4 nucleotides EX28DRAFT_0900 and EX28DRAFT_0901 overlap by 26 nucleotides
EX28DRAFT_0895: EX28DRAFT_0895 - Phage small terminase subunit, at 903,925 to 904,680
_0895
EX28DRAFT_0896: EX28DRAFT_0896 - Phage head completion protein (GPL), at 904,780 to 905,286
_0896
EX28DRAFT_0897: EX28DRAFT_0897 - P2-like prophage tail protein X, at 905,286 to 905,489
_0897
EX28DRAFT_0898: EX28DRAFT_0898 - holin, HP1 family, at 905,480 to 905,701
_0898
EX28DRAFT_0899: EX28DRAFT_0899 - Phage-related lysozyme (muraminidase), at 905,685 to 906,194
_0899
EX28DRAFT_0900: EX28DRAFT_0900 - phage lysis regulatory protein, LysB family, at 906,191 to 906,616
_0900
EX28DRAFT_0901: EX28DRAFT_0901 - hypothetical protein, at 906,591 to 906,749
_0901
Position (kb) 905
906 Strain fitness (log2 ratio) -2
-1
0
1 at 904.508 kb on + strand, within EX28DRAFT_0895 at 904.795 kb on - strand at 904.839 kb on - strand, within EX28DRAFT_0896 at 905.098 kb on + strand, within EX28DRAFT_0896 at 905.137 kb on + strand, within EX28DRAFT_0896 at 905.295 kb on + strand at 905.296 kb on - strand at 905.432 kb on - strand, within EX28DRAFT_0897 at 905.479 kb on + strand at 905.480 kb on - strand at 905.480 kb on - strand at 905.492 kb on - strand at 905.544 kb on - strand, within EX28DRAFT_0898 at 905.580 kb on - strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.622 kb on - strand, within EX28DRAFT_0898 at 905.642 kb on + strand, within EX28DRAFT_0898 at 905.643 kb on - strand, within EX28DRAFT_0898 at 905.763 kb on - strand, within EX28DRAFT_0899 at 906.115 kb on - strand, within EX28DRAFT_0899 at 906.390 kb on + strand, within EX28DRAFT_0900 at 906.485 kb on + strand, within EX28DRAFT_0900 at 906.558 kb on + strand, within EX28DRAFT_0900 at 906.637 kb on + strand, within EX28DRAFT_0901 at 906.638 kb on - strand, within EX28DRAFT_0901 at 906.638 kb on - strand, within EX28DRAFT_0901
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 904,508 + EX28DRAFT_0895 0.77 -0.5 904,795 - -1.2 904,839 - EX28DRAFT_0896 0.12 -0.2 905,098 + EX28DRAFT_0896 0.63 -0.8 905,137 + EX28DRAFT_0896 0.70 +0.7 905,295 + +0.5 905,296 - +0.6 905,432 - EX28DRAFT_0897 0.72 +1.7 905,479 + +1.6 905,480 - +1.1 905,480 - -0.4 905,492 - -0.1 905,544 - EX28DRAFT_0898 0.29 -1.9 905,580 - EX28DRAFT_0898 0.45 -1.7 905,621 + EX28DRAFT_0898 0.64 +0.2 905,621 + EX28DRAFT_0898 0.64 +1.0 905,621 + EX28DRAFT_0898 0.64 -0.0 905,621 + EX28DRAFT_0898 0.64 +1.3 905,622 - EX28DRAFT_0898 0.64 -2.4 905,642 + EX28DRAFT_0898 0.73 -0.6 905,643 - EX28DRAFT_0898 0.73 -0.0 905,763 - EX28DRAFT_0899 0.15 +0.5 906,115 - EX28DRAFT_0899 0.84 -2.6 906,390 + EX28DRAFT_0900 0.47 +0.1 906,485 + EX28DRAFT_0900 0.69 +1.3 906,558 + EX28DRAFT_0900 0.86 -0.0 906,637 + EX28DRAFT_0901 0.29 -0.9 906,638 - EX28DRAFT_0901 0.30 -0.7 906,638 - EX28DRAFT_0901 0.30 -1.1
Or see this region's nucleotide sequence