Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0868

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0866 and EX28DRAFT_0867 are separated by 137 nucleotidesEX28DRAFT_0867 and EX28DRAFT_0868 are separated by 302 nucleotidesEX28DRAFT_0868 and EX28DRAFT_0869 are separated by 84 nucleotides EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026 _0866 EX28DRAFT_0867: EX28DRAFT_0867 - hypothetical protein, at 880,164 to 880,495 _0867 EX28DRAFT_0868: EX28DRAFT_0868 - ABC-type oligopeptide transport system, periplasmic component, at 880,798 to 882,429 _0868 EX28DRAFT_0869: EX28DRAFT_0869 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 882,514 to 883,434 _0869 Position (kb) 880 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 879.942 kb on + strand, within EX28DRAFT_0866at 880.268 kb on + strand, within EX28DRAFT_0867at 880.302 kb on + strand, within EX28DRAFT_0867at 880.302 kb on + strand, within EX28DRAFT_0867at 880.457 kb on - strand, within EX28DRAFT_0867at 880.490 kb on - strandat 880.542 kb on + strandat 880.570 kb on + strandat 880.677 kb on - strandat 880.730 kb on - strandat 880.730 kb on - strandat 880.774 kb on + strandat 880.774 kb on + strandat 880.774 kb on + strandat 880.776 kb on + strandat 880.789 kb on - strandat 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.055 kb on - strand, within EX28DRAFT_0868at 881.158 kb on + strand, within EX28DRAFT_0868at 881.160 kb on + strand, within EX28DRAFT_0868at 881.268 kb on + strand, within EX28DRAFT_0868at 881.282 kb on + strand, within EX28DRAFT_0868at 881.302 kb on - strand, within EX28DRAFT_0868at 881.335 kb on + strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.446 kb on + strand, within EX28DRAFT_0868at 881.447 kb on - strand, within EX28DRAFT_0868at 881.447 kb on - strand, within EX28DRAFT_0868at 881.478 kb on + strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868at 881.564 kb on + strand, within EX28DRAFT_0868at 881.565 kb on - strand, within EX28DRAFT_0868at 881.608 kb on + strand, within EX28DRAFT_0868at 881.659 kb on - strand, within EX28DRAFT_0868at 881.681 kb on - strand, within EX28DRAFT_0868at 881.681 kb on - strand, within EX28DRAFT_0868at 881.693 kb on - strand, within EX28DRAFT_0868at 881.693 kb on - strand, within EX28DRAFT_0868at 881.695 kb on + strand, within EX28DRAFT_0868at 881.696 kb on - strand, within EX28DRAFT_0868at 881.696 kb on - strand, within EX28DRAFT_0868at 881.736 kb on - strand, within EX28DRAFT_0868at 881.736 kb on - strand, within EX28DRAFT_0868at 881.775 kb on + strand, within EX28DRAFT_0868at 881.819 kb on - strand, within EX28DRAFT_0868at 881.824 kb on + strand, within EX28DRAFT_0868at 881.825 kb on - strand, within EX28DRAFT_0868at 881.825 kb on - strand, within EX28DRAFT_0868at 881.825 kb on - strand, within EX28DRAFT_0868at 881.837 kb on - strand, within EX28DRAFT_0868at 882.134 kb on - strand, within EX28DRAFT_0868at 882.197 kb on - strand, within EX28DRAFT_0868at 882.198 kb on + strand, within EX28DRAFT_0868at 882.198 kb on + strand, within EX28DRAFT_0868at 882.198 kb on + strand, within EX28DRAFT_0868at 882.199 kb on - strand, within EX28DRAFT_0868at 882.328 kb on + strandat 882.329 kb on - strandat 882.329 kb on - strandat 882.329 kb on - strandat 882.329 kb on - strandat 882.329 kb on - strandat 882.398 kb on - strandat 882.412 kb on + strandat 882.415 kb on - strandat 882.483 kb on + strandat 882.484 kb on - strandat 882.484 kb on - strandat 882.484 kb on - strandat 882.486 kb on + strandat 882.486 kb on + strandat 882.487 kb on - strandat 882.488 kb on + strandat 882.488 kb on + strandat 882.488 kb on + strandat 882.489 kb on - strandat 882.561 kb on - strandat 882.564 kb on + strandat 882.564 kb on + strandat 882.701 kb on - strand, within EX28DRAFT_0869at 882.756 kb on + strand, within EX28DRAFT_0869at 882.764 kb on - strand, within EX28DRAFT_0869at 882.888 kb on + strand, within EX28DRAFT_0869at 882.959 kb on + strand, within EX28DRAFT_0869at 882.971 kb on + strand, within EX28DRAFT_0869at 882.972 kb on - strand, within EX28DRAFT_0869at 883.171 kb on - strand, within EX28DRAFT_0869at 883.171 kb on - strand, within EX28DRAFT_0869at 883.171 kb on - strand, within EX28DRAFT_0869at 883.216 kb on + strand, within EX28DRAFT_0869at 883.216 kb on + strand, within EX28DRAFT_0869at 883.216 kb on + strand, within EX28DRAFT_0869at 883.216 kb on + strand, within EX28DRAFT_0869at 883.217 kb on - strand, within EX28DRAFT_0869

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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879,942 + EX28DRAFT_0866 0.87 +0.6
880,268 + EX28DRAFT_0867 0.31 +0.0
880,302 + EX28DRAFT_0867 0.42 +1.0
880,302 + EX28DRAFT_0867 0.42 -0.4
880,457 - EX28DRAFT_0867 0.88 +0.1
880,490 - +0.1
880,542 + +0.1
880,570 + -0.1
880,677 - -0.2
880,730 - -1.8
880,730 - -0.6
880,774 + -0.4
880,774 + -0.3
880,774 + -0.8
880,776 + -0.3
880,789 - -0.5
881,030 + EX28DRAFT_0868 0.14 -0.6
881,030 + EX28DRAFT_0868 0.14 -0.7
881,030 + EX28DRAFT_0868 0.14 -0.5
881,030 + EX28DRAFT_0868 0.14 +0.3
881,030 + EX28DRAFT_0868 0.14 -0.0
881,030 + EX28DRAFT_0868 0.14 -1.0
881,055 - EX28DRAFT_0868 0.16 +0.3
881,158 + EX28DRAFT_0868 0.22 -0.2
881,160 + EX28DRAFT_0868 0.22 -0.0
881,268 + EX28DRAFT_0868 0.29 +0.4
881,282 + EX28DRAFT_0868 0.30 -1.1
881,302 - EX28DRAFT_0868 0.31 +1.4
881,335 + EX28DRAFT_0868 0.33 +1.1
881,342 - EX28DRAFT_0868 0.33 -0.8
881,342 - EX28DRAFT_0868 0.33 -0.4
881,342 - EX28DRAFT_0868 0.33 +0.4
881,446 + EX28DRAFT_0868 0.40 -0.8
881,447 - EX28DRAFT_0868 0.40 +0.5
881,447 - EX28DRAFT_0868 0.40 -0.7
881,478 + EX28DRAFT_0868 0.42 -0.3
881,479 - EX28DRAFT_0868 0.42 -0.7
881,479 - EX28DRAFT_0868 0.42 -0.2
881,479 - EX28DRAFT_0868 0.42 -0.3
881,564 + EX28DRAFT_0868 0.47 +1.2
881,565 - EX28DRAFT_0868 0.47 +2.0
881,608 + EX28DRAFT_0868 0.50 -0.9
881,659 - EX28DRAFT_0868 0.53 -1.8
881,681 - EX28DRAFT_0868 0.54 -3.7
881,681 - EX28DRAFT_0868 0.54 -1.2
881,693 - EX28DRAFT_0868 0.55 -0.6
881,693 - EX28DRAFT_0868 0.55 -0.2
881,695 + EX28DRAFT_0868 0.55 +0.9
881,696 - EX28DRAFT_0868 0.55 -0.0
881,696 - EX28DRAFT_0868 0.55 +0.6
881,736 - EX28DRAFT_0868 0.57 -0.9
881,736 - EX28DRAFT_0868 0.57 -0.8
881,775 + EX28DRAFT_0868 0.60 -0.4
881,819 - EX28DRAFT_0868 0.63 +0.3
881,824 + EX28DRAFT_0868 0.63 -0.0
881,825 - EX28DRAFT_0868 0.63 -0.7
881,825 - EX28DRAFT_0868 0.63 -0.5
881,825 - EX28DRAFT_0868 0.63 +0.6
881,837 - EX28DRAFT_0868 0.64 -0.3
882,134 - EX28DRAFT_0868 0.82 -0.2
882,197 - EX28DRAFT_0868 0.86 -0.3
882,198 + EX28DRAFT_0868 0.86 -0.1
882,198 + EX28DRAFT_0868 0.86 +0.8
882,198 + EX28DRAFT_0868 0.86 +0.2
882,199 - EX28DRAFT_0868 0.86 -0.2
882,328 + +0.3
882,329 - -0.6
882,329 - +0.1
882,329 - +0.1
882,329 - -0.2
882,329 - -0.4
882,398 - -0.9
882,412 + -0.4
882,415 - -0.2
882,483 + -0.1
882,484 - -0.7
882,484 - +0.4
882,484 - -0.1
882,486 + -0.7
882,486 + -0.2
882,487 - -0.3
882,488 + -0.3
882,488 + +0.1
882,488 + -1.3
882,489 - -0.5
882,561 - -0.4
882,564 + -0.4
882,564 + -1.0
882,701 - EX28DRAFT_0869 0.20 -0.4
882,756 + EX28DRAFT_0869 0.26 -0.2
882,764 - EX28DRAFT_0869 0.27 -0.7
882,888 + EX28DRAFT_0869 0.41 -1.5
882,959 + EX28DRAFT_0869 0.48 -0.5
882,971 + EX28DRAFT_0869 0.50 +1.4
882,972 - EX28DRAFT_0869 0.50 -1.1
883,171 - EX28DRAFT_0869 0.71 -0.1
883,171 - EX28DRAFT_0869 0.71 -2.5
883,171 - EX28DRAFT_0869 0.71 -0.5
883,216 + EX28DRAFT_0869 0.76 +0.3
883,216 + EX28DRAFT_0869 0.76 -1.1
883,216 + EX28DRAFT_0869 0.76 +2.0
883,216 + EX28DRAFT_0869 0.76 -0.4
883,217 - EX28DRAFT_0869 0.76 -0.1

Or see this region's nucleotide sequence