Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0852

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0851 and EX28DRAFT_0852 overlap by 4 nucleotidesEX28DRAFT_0852 and EX28DRAFT_0853 overlap by 4 nucleotidesEX28DRAFT_0853 and EX28DRAFT_0854 overlap by 1 nucleotides EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546 _0851 EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078 _0852 EX28DRAFT_0853: EX28DRAFT_0853 - respiratory nitrate reductase chaperone NarJ, at 866,075 to 866,785 _0853 EX28DRAFT_0854: EX28DRAFT_0854 - respiratory nitrate reductase, gamma subunit, at 866,785 to 867,462 _0854 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 863.599 kb on + strand, within EX28DRAFT_0851at 863.823 kb on + strand, within EX28DRAFT_0851at 863.869 kb on + strand, within EX28DRAFT_0851at 864.106 kb on + strand, within EX28DRAFT_0851at 864.290 kb on - strandat 864.307 kb on - strandat 864.307 kb on - strandat 864.312 kb on + strandat 864.433 kb on + strandat 864.434 kb on - strandat 864.434 kb on - strandat 864.447 kb on - strandat 864.480 kb on + strandat 864.480 kb on + strandat 864.481 kb on - strandat 864.496 kb on - strandat 864.516 kb on + strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.654 kb on + strandat 864.800 kb on + strand, within EX28DRAFT_0852at 864.841 kb on - strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 865.045 kb on - strand, within EX28DRAFT_0852at 865.061 kb on + strand, within EX28DRAFT_0852at 865.074 kb on + strand, within EX28DRAFT_0852at 865.075 kb on - strand, within EX28DRAFT_0852at 865.144 kb on - strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.602 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.691 kb on + strand, within EX28DRAFT_0852at 865.757 kb on + strand, within EX28DRAFT_0852at 865.763 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.974 kb on - strandat 866.227 kb on - strand, within EX28DRAFT_0853at 866.799 kb on + strandat 866.799 kb on + strandat 866.800 kb on - strandat 866.825 kb on - strandat 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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863,599 + EX28DRAFT_0851 0.75 +0.2
863,823 + EX28DRAFT_0851 0.81 +0.8
863,869 + EX28DRAFT_0851 0.82 +0.9
864,106 + EX28DRAFT_0851 0.88 -2.6
864,290 - +0.6
864,307 - +0.8
864,307 - -0.1
864,312 + +1.0
864,433 + +0.4
864,434 - +1.4
864,434 - +0.9
864,447 - -0.6
864,480 + +1.0
864,480 + +0.4
864,481 - +1.1
864,496 - +0.8
864,516 + +0.1
864,540 - +0.1
864,540 - -0.2
864,540 - +1.4
864,654 + +0.5
864,800 + EX28DRAFT_0852 0.17 +1.2
864,841 - EX28DRAFT_0852 0.19 -0.2
864,843 + EX28DRAFT_0852 0.20 +0.8
864,843 + EX28DRAFT_0852 0.20 +1.0
865,045 - EX28DRAFT_0852 0.33 +0.3
865,061 + EX28DRAFT_0852 0.34 +1.0
865,074 + EX28DRAFT_0852 0.35 +0.9
865,075 - EX28DRAFT_0852 0.35 +1.2
865,144 - EX28DRAFT_0852 0.39 +0.8
865,202 + EX28DRAFT_0852 0.43 +0.8
865,202 + EX28DRAFT_0852 0.43 +0.3
865,203 - EX28DRAFT_0852 0.43 +0.4
865,203 - EX28DRAFT_0852 0.43 +1.3
865,602 + EX28DRAFT_0852 0.69 +0.6
865,691 + EX28DRAFT_0852 0.75 -2.2
865,691 + EX28DRAFT_0852 0.75 +0.7
865,757 + EX28DRAFT_0852 0.79 +0.5
865,763 + EX28DRAFT_0852 0.79 +0.7
865,869 + EX28DRAFT_0852 0.86 +1.2
865,869 + EX28DRAFT_0852 0.86 -2.1
865,869 + EX28DRAFT_0852 0.86 -2.7
865,869 + EX28DRAFT_0852 0.86 +1.4
865,869 + EX28DRAFT_0852 0.86 +1.4
865,870 - EX28DRAFT_0852 0.86 +0.7
865,870 - EX28DRAFT_0852 0.86 +1.0
865,870 - EX28DRAFT_0852 0.86 +0.4
865,893 + EX28DRAFT_0852 0.88 +0.8
865,893 + EX28DRAFT_0852 0.88 +0.5
865,974 - +0.8
866,227 - EX28DRAFT_0853 0.21 +0.8
866,799 + +0.8
866,799 + +0.8
866,800 - +0.5
866,825 - +0.6
867,013 + EX28DRAFT_0854 0.34 +1.9
867,013 + EX28DRAFT_0854 0.34 +0.7
867,013 + EX28DRAFT_0854 0.34 +0.7
867,014 - EX28DRAFT_0854 0.34 +1.4
867,014 - EX28DRAFT_0854 0.34 +1.3

Or see this region's nucleotide sequence