Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0849 and EX28DRAFT_0850 are separated by 309 nucleotides EX28DRAFT_0850 and EX28DRAFT_0851 are separated by 381 nucleotides
EX28DRAFT_0849: EX28DRAFT_0849 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 856,918 to 858,714
_0849
EX28DRAFT_0850: EX28DRAFT_0850 - nitrite extrusion protein (nitrite facilitator), at 859,024 to 860,421
_0850
EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546
_0851
Position (kb)
859
860
861 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 858.229 kb on - strand, within EX28DRAFT_0849 at 858.282 kb on + strand, within EX28DRAFT_0849 at 858.417 kb on + strand, within EX28DRAFT_0849 at 858.596 kb on - strand at 858.605 kb on - strand at 858.697 kb on + strand at 858.698 kb on - strand at 858.714 kb on + strand at 858.714 kb on + strand at 858.715 kb on - strand at 858.781 kb on + strand at 858.782 kb on - strand at 858.783 kb on + strand at 858.846 kb on - strand at 858.980 kb on - strand at 858.988 kb on - strand at 859.023 kb on + strand at 859.024 kb on - strand at 859.121 kb on + strand at 859.121 kb on + strand at 859.136 kb on + strand at 859.224 kb on + strand, within EX28DRAFT_0850 at 859.306 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.429 kb on - strand, within EX28DRAFT_0850 at 859.548 kb on + strand, within EX28DRAFT_0850 at 859.549 kb on - strand, within EX28DRAFT_0850 at 859.722 kb on + strand, within EX28DRAFT_0850 at 859.723 kb on - strand, within EX28DRAFT_0850 at 859.723 kb on - strand, within EX28DRAFT_0850 at 859.810 kb on + strand, within EX28DRAFT_0850 at 860.360 kb on - strand at 860.360 kb on - strand at 860.379 kb on + strand at 860.379 kb on + strand at 860.390 kb on + strand at 860.391 kb on - strand at 860.391 kb on - strand at 860.415 kb on + strand at 860.419 kb on + strand at 860.419 kb on + strand at 860.564 kb on - strand at 860.650 kb on + strand at 860.769 kb on + strand at 860.830 kb on + strand at 860.831 kb on - strand at 860.976 kb on + strand at 861.134 kb on - strand at 861.328 kb on + strand, within EX28DRAFT_0851 at 861.329 kb on - strand, within EX28DRAFT_0851 at 861.343 kb on + strand, within EX28DRAFT_0851 at 861.344 kb on - strand, within EX28DRAFT_0851
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 858,229 - EX28DRAFT_0849 0.73 -1.9 858,282 + EX28DRAFT_0849 0.76 -0.5 858,417 + EX28DRAFT_0849 0.83 -0.6 858,596 - +1.0 858,605 - -0.4 858,697 + +0.9 858,698 - +0.1 858,714 + +0.8 858,714 + +1.6 858,715 - -0.6 858,781 + +0.3 858,782 - +0.6 858,783 + +0.1 858,846 - -0.6 858,980 - +1.1 858,988 - -1.2 859,023 + -0.5 859,024 - -0.5 859,121 + +0.7 859,121 + +0.2 859,136 + +0.2 859,224 + EX28DRAFT_0850 0.14 -0.1 859,306 - EX28DRAFT_0850 0.20 -1.2 859,405 - EX28DRAFT_0850 0.27 +0.1 859,405 - EX28DRAFT_0850 0.27 -0.4 859,429 - EX28DRAFT_0850 0.29 -0.9 859,548 + EX28DRAFT_0850 0.37 -0.3 859,549 - EX28DRAFT_0850 0.38 -0.3 859,722 + EX28DRAFT_0850 0.50 +0.0 859,723 - EX28DRAFT_0850 0.50 -0.8 859,723 - EX28DRAFT_0850 0.50 +0.0 859,810 + EX28DRAFT_0850 0.56 +1.0 860,360 - +0.0 860,360 - -0.3 860,379 + +0.8 860,379 + +0.2 860,390 + +0.7 860,391 - +0.4 860,391 - +0.4 860,415 + +1.9 860,419 + +0.7 860,419 + +0.4 860,564 - +0.5 860,650 + -0.4 860,769 + -0.2 860,830 + +0.9 860,831 - +1.1 860,976 + +0.5 861,134 - +2.3 861,328 + EX28DRAFT_0851 0.14 +0.9 861,329 - EX28DRAFT_0851 0.14 +1.8 861,343 + EX28DRAFT_0851 0.14 +1.5 861,344 - EX28DRAFT_0851 0.14 +1.6
Or see this region's nucleotide sequence