Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0835 and EX28DRAFT_0836 are separated by 270 nucleotides EX28DRAFT_0836 and EX28DRAFT_0837 are separated by 177 nucleotides EX28DRAFT_0837 and EX28DRAFT_0838 are separated by 30 nucleotides
EX28DRAFT_0835: EX28DRAFT_0835 - calcium/proton exchanger, at 838,683 to 839,783
_0835
EX28DRAFT_0836: EX28DRAFT_0836 - Putative cation transport regulator, at 840,054 to 840,284
_0836
EX28DRAFT_0837: EX28DRAFT_0837 - Uncharacterized protein involved in cation transport, at 840,462 to 841,157
_0837
EX28DRAFT_0838: EX28DRAFT_0838 - Domain of unknown function (DUF1883), at 841,188 to 841,427
_0838
Position (kb) 840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 839.327 kb on + strand, within EX28DRAFT_0835 at 839.357 kb on - strand, within EX28DRAFT_0835 at 839.364 kb on - strand, within EX28DRAFT_0835 at 839.382 kb on - strand, within EX28DRAFT_0835 at 839.384 kb on - strand, within EX28DRAFT_0835 at 839.451 kb on - strand, within EX28DRAFT_0835 at 839.533 kb on - strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.654 kb on + strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.661 kb on - strand, within EX28DRAFT_0835 at 840.122 kb on + strand, within EX28DRAFT_0836 at 840.123 kb on - strand, within EX28DRAFT_0836 at 840.159 kb on + strand, within EX28DRAFT_0836 at 840.160 kb on - strand, within EX28DRAFT_0836 at 840.264 kb on - strand at 840.264 kb on - strand at 840.282 kb on + strand at 840.282 kb on + strand at 840.367 kb on - strand at 840.421 kb on + strand at 840.421 kb on + strand at 840.422 kb on - strand at 840.497 kb on + strand at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.861 kb on - strand, within EX28DRAFT_0837 at 840.920 kb on + strand, within EX28DRAFT_0837 at 840.946 kb on - strand, within EX28DRAFT_0837 at 841.023 kb on + strand, within EX28DRAFT_0837 at 841.183 kb on + strand at 841.202 kb on - strand at 841.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 839,327 + EX28DRAFT_0835 0.58 -0.6 839,357 - EX28DRAFT_0835 0.61 +0.5 839,364 - EX28DRAFT_0835 0.62 -0.1 839,382 - EX28DRAFT_0835 0.63 +0.2 839,384 - EX28DRAFT_0835 0.64 -0.5 839,451 - EX28DRAFT_0835 0.70 +0.5 839,533 - EX28DRAFT_0835 0.77 +0.1 839,559 + EX28DRAFT_0835 0.80 -1.0 839,559 + EX28DRAFT_0835 0.80 +0.8 839,559 + EX28DRAFT_0835 0.80 -0.2 839,654 + EX28DRAFT_0835 0.88 +0.1 839,655 - EX28DRAFT_0835 0.88 +0.6 839,655 - EX28DRAFT_0835 0.88 +0.8 839,661 - EX28DRAFT_0835 0.89 -0.5 840,122 + EX28DRAFT_0836 0.29 +0.0 840,123 - EX28DRAFT_0836 0.30 -0.5 840,159 + EX28DRAFT_0836 0.45 -0.1 840,160 - EX28DRAFT_0836 0.46 -0.9 840,264 - +1.8 840,264 - -0.5 840,282 + -0.0 840,282 + +0.6 840,367 - -0.2 840,421 + +0.6 840,421 + +0.3 840,422 - +0.4 840,497 + -0.6 840,858 + EX28DRAFT_0837 0.57 +0.4 840,858 + EX28DRAFT_0837 0.57 -1.2 840,858 + EX28DRAFT_0837 0.57 +0.9 840,859 - EX28DRAFT_0837 0.57 +0.5 840,859 - EX28DRAFT_0837 0.57 +0.1 840,859 - EX28DRAFT_0837 0.57 -0.5 840,861 - EX28DRAFT_0837 0.57 +0.3 840,920 + EX28DRAFT_0837 0.66 -1.7 840,946 - EX28DRAFT_0837 0.70 -1.0 841,023 + EX28DRAFT_0837 0.81 -1.1 841,183 + -2.2 841,202 - -0.5 841,202 - -0.3
Or see this region's nucleotide sequence