Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0807 and EX28DRAFT_0808 are separated by 24 nucleotides EX28DRAFT_0808 and EX28DRAFT_0809 are separated by 65 nucleotides
EX28DRAFT_0807: EX28DRAFT_0807 - type VI secretion ATPase, ClpV1 family, at 807,486 to 810,101
_0807
EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544
_0808
EX28DRAFT_0809: EX28DRAFT_0809 - Rhs element Vgr protein, at 811,610 to 814,150
_0809
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.306 kb on + strand, within EX28DRAFT_0807 at 809.307 kb on - strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.645 kb on + strand, within EX28DRAFT_0807 at 809.799 kb on + strand, within EX28DRAFT_0807 at 809.800 kb on - strand, within EX28DRAFT_0807 at 809.888 kb on + strand at 809.889 kb on - strand at 810.014 kb on - strand at 810.014 kb on - strand at 810.102 kb on + strand at 810.121 kb on - strand at 810.140 kb on + strand at 810.287 kb on + strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.486 kb on + strand, within EX28DRAFT_0808 at 810.606 kb on + strand, within EX28DRAFT_0808 at 810.759 kb on + strand, within EX28DRAFT_0808 at 810.805 kb on - strand, within EX28DRAFT_0808 at 810.919 kb on - strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.353 kb on + strand, within EX28DRAFT_0808 at 811.354 kb on - strand, within EX28DRAFT_0808 at 811.428 kb on + strand at 811.543 kb on - strand at 811.589 kb on - strand at 811.593 kb on + strand at 811.594 kb on - strand at 811.610 kb on - strand at 811.805 kb on + strand at 812.196 kb on - strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.420 kb on + strand, within EX28DRAFT_0809
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 809,306 + EX28DRAFT_0807 0.70 -0.1 809,307 - EX28DRAFT_0807 0.70 +1.4 809,464 + EX28DRAFT_0807 0.76 +0.4 809,464 + EX28DRAFT_0807 0.76 +1.0 809,465 - EX28DRAFT_0807 0.76 +0.7 809,465 - EX28DRAFT_0807 0.76 -0.3 809,465 - EX28DRAFT_0807 0.76 +0.8 809,645 + EX28DRAFT_0807 0.83 +0.1 809,799 + EX28DRAFT_0807 0.88 -0.1 809,800 - EX28DRAFT_0807 0.88 +0.9 809,888 + +0.3 809,889 - +0.3 810,014 - +0.5 810,014 - +2.0 810,102 + +1.5 810,121 - +0.3 810,140 + +1.9 810,287 + EX28DRAFT_0808 0.11 -1.3 810,469 - EX28DRAFT_0808 0.24 +1.9 810,469 - EX28DRAFT_0808 0.24 +0.6 810,469 - EX28DRAFT_0808 0.24 -1.1 810,469 - EX28DRAFT_0808 0.24 -0.8 810,486 + EX28DRAFT_0808 0.25 +0.4 810,606 + EX28DRAFT_0808 0.34 +0.5 810,759 + EX28DRAFT_0808 0.45 +1.1 810,805 - EX28DRAFT_0808 0.48 +1.2 810,919 - EX28DRAFT_0808 0.56 +1.0 811,009 + EX28DRAFT_0808 0.62 +1.9 811,009 + EX28DRAFT_0808 0.62 +0.0 811,009 + EX28DRAFT_0808 0.62 +0.4 811,009 + EX28DRAFT_0808 0.62 +1.2 811,010 - EX28DRAFT_0808 0.62 +1.0 811,010 - EX28DRAFT_0808 0.62 +0.1 811,353 + EX28DRAFT_0808 0.86 +1.4 811,354 - EX28DRAFT_0808 0.87 +1.6 811,428 + +0.8 811,543 - -0.5 811,589 - +0.9 811,593 + +0.2 811,594 - +2.0 811,610 - +0.3 811,805 + +0.9 812,196 - EX28DRAFT_0809 0.23 -3.3 812,375 + EX28DRAFT_0809 0.30 -0.9 812,375 + EX28DRAFT_0809 0.30 +0.4 812,420 + EX28DRAFT_0809 0.32 +2.0
Or see this region's nucleotide sequence