Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0800 and EX28DRAFT_0801 overlap by 4 nucleotides EX28DRAFT_0801 and EX28DRAFT_0802 are separated by 16 nucleotides EX28DRAFT_0802 and EX28DRAFT_0803 are separated by 9 nucleotides EX28DRAFT_0803 and EX28DRAFT_0804 overlap by 8 nucleotides
EX28DRAFT_0800: EX28DRAFT_0800 - FHA domain protein, at 799,587 to 801,350
_0800
EX28DRAFT_0801: EX28DRAFT_0801 - Serine/threonine protein phosphatase, at 801,347 to 802,144
_0801
EX28DRAFT_0802: EX28DRAFT_0802 - hypothetical protein, at 802,161 to 803,159
_0802
EX28DRAFT_0803: EX28DRAFT_0803 - Protein of avirulence locus involved in temperature-dependent protein secretion, at 803,169 to 803,981
_0803
EX28DRAFT_0804: EX28DRAFT_0804 - type VI secretion system lysozyme-like protein, at 803,974 to 804,537
_0804
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.226 kb on - strand at 801.294 kb on + strand at 801.421 kb on - strand at 801.511 kb on + strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.563 kb on + strand, within EX28DRAFT_0801 at 801.618 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.958 kb on + strand, within EX28DRAFT_0801 at 801.990 kb on + strand, within EX28DRAFT_0801 at 801.991 kb on - strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.142 kb on + strand at 802.305 kb on - strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.424 kb on + strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.935 kb on + strand, within EX28DRAFT_0802 at 803.031 kb on - strand, within EX28DRAFT_0802 at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.881 kb on - strand, within EX28DRAFT_0803
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 801,226 - -0.0 801,294 + +0.7 801,421 - -0.3 801,511 + EX28DRAFT_0801 0.21 -0.4 801,512 - EX28DRAFT_0801 0.21 -2.7 801,512 - EX28DRAFT_0801 0.21 +2.6 801,563 + EX28DRAFT_0801 0.27 -2.7 801,618 - EX28DRAFT_0801 0.34 +0.8 801,816 - EX28DRAFT_0801 0.59 +0.6 801,816 - EX28DRAFT_0801 0.59 -0.0 801,958 + EX28DRAFT_0801 0.77 -1.4 801,990 + EX28DRAFT_0801 0.81 +0.4 801,991 - EX28DRAFT_0801 0.81 -0.6 802,046 + EX28DRAFT_0801 0.88 -0.2 802,046 + EX28DRAFT_0801 0.88 +0.9 802,046 + EX28DRAFT_0801 0.88 +1.0 802,046 + EX28DRAFT_0801 0.88 -0.7 802,047 - EX28DRAFT_0801 0.88 +0.7 802,047 - EX28DRAFT_0801 0.88 -0.6 802,047 - EX28DRAFT_0801 0.88 -0.4 802,047 - EX28DRAFT_0801 0.88 -0.4 802,142 + +0.9 802,305 - EX28DRAFT_0802 0.14 +0.5 802,418 + EX28DRAFT_0802 0.26 +0.3 802,418 + EX28DRAFT_0802 0.26 +1.7 802,424 + EX28DRAFT_0802 0.26 +0.6 802,425 - EX28DRAFT_0802 0.26 +0.2 802,425 - EX28DRAFT_0802 0.26 +0.6 802,425 - EX28DRAFT_0802 0.26 +0.4 802,803 + EX28DRAFT_0802 0.64 +0.8 802,803 + EX28DRAFT_0802 0.64 +0.1 802,804 - EX28DRAFT_0802 0.64 +0.3 802,804 - EX28DRAFT_0802 0.64 +0.2 802,935 + EX28DRAFT_0802 0.77 +0.2 803,031 - EX28DRAFT_0802 0.87 +1.3 803,174 + +0.8 803,174 + +1.4 803,174 + -1.3 803,174 + +0.3 803,568 - EX28DRAFT_0803 0.49 -0.7 803,568 - EX28DRAFT_0803 0.49 +0.8 803,568 - EX28DRAFT_0803 0.49 +0.4 803,881 - EX28DRAFT_0803 0.88 +0.2
Or see this region's nucleotide sequence