Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0790 and EX28DRAFT_0791 are separated by 16 nucleotides EX28DRAFT_0791 and EX28DRAFT_0792 are separated by 11 nucleotides
EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222
_0790
EX28DRAFT_0791: EX28DRAFT_0791 - type VI secretion-associated protein, BMA_A0400 family, at 793,239 to 793,955
_0791
EX28DRAFT_0792: EX28DRAFT_0792 - type VI secretion-associated protein, ImpA family, at 793,967 to 794,983
_0792
Position (kb) 793
794 Strain fitness (log2 ratio) -1
0
1
2 at 792.553 kb on + strand, within EX28DRAFT_0790 at 792.709 kb on + strand, within EX28DRAFT_0790 at 792.710 kb on - strand, within EX28DRAFT_0790 at 792.719 kb on - strand, within EX28DRAFT_0790 at 792.743 kb on - strand, within EX28DRAFT_0790 at 792.761 kb on - strand, within EX28DRAFT_0790 at 793.003 kb on - strand at 793.239 kb on - strand at 793.286 kb on - strand at 793.807 kb on - strand, within EX28DRAFT_0791 at 793.863 kb on - strand, within EX28DRAFT_0791 at 793.967 kb on - strand at 793.973 kb on - strand at 794.031 kb on - strand at 794.141 kb on + strand, within EX28DRAFT_0792 at 794.142 kb on - strand, within EX28DRAFT_0792 at 794.182 kb on - strand, within EX28DRAFT_0792 at 794.328 kb on - strand, within EX28DRAFT_0792 at 794.359 kb on + strand, within EX28DRAFT_0792 at 794.670 kb on + strand, within EX28DRAFT_0792 at 794.834 kb on + strand, within EX28DRAFT_0792 at 794.835 kb on - strand, within EX28DRAFT_0792 at 794.846 kb on + strand, within EX28DRAFT_0792 at 794.905 kb on + strand at 794.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 792,553 + EX28DRAFT_0790 0.81 +0.2 792,709 + EX28DRAFT_0790 0.86 +0.4 792,710 - EX28DRAFT_0790 0.86 +0.0 792,719 - EX28DRAFT_0790 0.86 +0.2 792,743 - EX28DRAFT_0790 0.87 +0.3 792,761 - EX28DRAFT_0790 0.87 +1.5 793,003 - +0.5 793,239 - -0.4 793,286 - +0.2 793,807 - EX28DRAFT_0791 0.79 +1.0 793,863 - EX28DRAFT_0791 0.87 +0.6 793,967 - +1.3 793,973 - +0.6 794,031 - +0.5 794,141 + EX28DRAFT_0792 0.17 -1.6 794,142 - EX28DRAFT_0792 0.17 +1.4 794,182 - EX28DRAFT_0792 0.21 +0.8 794,328 - EX28DRAFT_0792 0.35 +0.2 794,359 + EX28DRAFT_0792 0.39 -0.1 794,670 + EX28DRAFT_0792 0.69 +0.0 794,834 + EX28DRAFT_0792 0.85 +2.3 794,835 - EX28DRAFT_0792 0.85 +1.2 794,846 + EX28DRAFT_0792 0.86 +0.6 794,905 + -0.4 794,906 - +0.1
Or see this region's nucleotide sequence