Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0790

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0789 and EX28DRAFT_0790 are separated by 2 nucleotidesEX28DRAFT_0790 and EX28DRAFT_0791 are separated by 16 nucleotidesEX28DRAFT_0791 and EX28DRAFT_0792 are separated by 11 nucleotides EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599 _0789 EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222 _0790 EX28DRAFT_0791: EX28DRAFT_0791 - type VI secretion-associated protein, BMA_A0400 family, at 793,239 to 793,955 _0791 EX28DRAFT_0792: EX28DRAFT_0792 - type VI secretion-associated protein, ImpA family, at 793,967 to 794,983 _0792 Position (kb) 789 790 791 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 788.756 kb on + strand, within EX28DRAFT_0789at 788.781 kb on + strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 789.012 kb on + strand, within EX28DRAFT_0789at 789.024 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789at 789.598 kb on - strandat 789.598 kb on - strandat 789.745 kb on + strandat 789.748 kb on + strandat 789.749 kb on - strandat 789.767 kb on + strandat 789.768 kb on - strandat 789.768 kb on - strandat 789.807 kb on - strandat 789.807 kb on - strandat 790.010 kb on + strand, within EX28DRAFT_0790at 790.010 kb on + strand, within EX28DRAFT_0790at 790.017 kb on - strand, within EX28DRAFT_0790at 790.031 kb on + strand, within EX28DRAFT_0790at 790.032 kb on - strand, within EX28DRAFT_0790at 790.039 kb on + strand, within EX28DRAFT_0790at 790.207 kb on + strand, within EX28DRAFT_0790at 790.208 kb on - strand, within EX28DRAFT_0790at 790.273 kb on + strand, within EX28DRAFT_0790at 790.274 kb on - strand, within EX28DRAFT_0790at 790.274 kb on - strand, within EX28DRAFT_0790at 790.430 kb on + strand, within EX28DRAFT_0790at 790.557 kb on - strand, within EX28DRAFT_0790at 790.671 kb on - strand, within EX28DRAFT_0790at 790.718 kb on + strand, within EX28DRAFT_0790at 790.718 kb on + strand, within EX28DRAFT_0790at 790.778 kb on + strand, within EX28DRAFT_0790at 790.779 kb on - strand, within EX28DRAFT_0790at 790.937 kb on - strand, within EX28DRAFT_0790at 790.937 kb on - strand, within EX28DRAFT_0790at 791.106 kb on - strand, within EX28DRAFT_0790at 791.411 kb on + strand, within EX28DRAFT_0790at 791.417 kb on + strand, within EX28DRAFT_0790at 791.417 kb on + strand, within EX28DRAFT_0790at 791.417 kb on + strand, within EX28DRAFT_0790at 791.417 kb on + strand, within EX28DRAFT_0790at 791.417 kb on + strand, within EX28DRAFT_0790at 791.418 kb on - strand, within EX28DRAFT_0790at 791.447 kb on + strand, within EX28DRAFT_0790at 791.463 kb on - strand, within EX28DRAFT_0790at 791.811 kb on - strand, within EX28DRAFT_0790at 791.811 kb on - strand, within EX28DRAFT_0790at 791.812 kb on + strand, within EX28DRAFT_0790at 791.921 kb on - strand, within EX28DRAFT_0790at 791.954 kb on + strand, within EX28DRAFT_0790at 791.955 kb on - strand, within EX28DRAFT_0790at 791.955 kb on - strand, within EX28DRAFT_0790at 792.553 kb on + strand, within EX28DRAFT_0790at 792.709 kb on + strand, within EX28DRAFT_0790at 792.710 kb on - strand, within EX28DRAFT_0790at 792.719 kb on - strand, within EX28DRAFT_0790at 792.743 kb on - strand, within EX28DRAFT_0790at 792.761 kb on - strand, within EX28DRAFT_0790at 793.003 kb on - strandat 793.239 kb on - strandat 793.286 kb on - strandat 793.807 kb on - strand, within EX28DRAFT_0791at 793.863 kb on - strand, within EX28DRAFT_0791at 793.967 kb on - strandat 793.973 kb on - strandat 794.031 kb on - strandat 794.141 kb on + strand, within EX28DRAFT_0792at 794.142 kb on - strand, within EX28DRAFT_0792at 794.182 kb on - strand, within EX28DRAFT_0792

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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788,756 + EX28DRAFT_0789 0.32 +0.2
788,781 + EX28DRAFT_0789 0.34 +1.0
788,782 - EX28DRAFT_0789 0.34 +1.1
788,782 - EX28DRAFT_0789 0.34 +0.5
788,782 - EX28DRAFT_0789 0.34 -0.2
788,782 - EX28DRAFT_0789 0.34 +0.9
789,012 + EX28DRAFT_0789 0.53 +0.9
789,024 - EX28DRAFT_0789 0.54 +1.0
789,070 - EX28DRAFT_0789 0.57 +0.9
789,070 - EX28DRAFT_0789 0.57 +0.5
789,598 - -0.4
789,598 - -0.6
789,745 + +0.8
789,748 + -0.6
789,749 - -0.4
789,767 + -0.1
789,768 - +1.4
789,768 - +0.3
789,807 - -2.8
789,807 - +0.4
790,010 + EX28DRAFT_0790 0.11 -0.2
790,010 + EX28DRAFT_0790 0.11 +0.9
790,017 - EX28DRAFT_0790 0.11 -0.2
790,031 + EX28DRAFT_0790 0.12 -0.3
790,032 - EX28DRAFT_0790 0.12 -0.2
790,039 + EX28DRAFT_0790 0.12 -0.1
790,207 + EX28DRAFT_0790 0.17 +0.2
790,208 - EX28DRAFT_0790 0.17 +0.3
790,273 + EX28DRAFT_0790 0.19 -0.2
790,274 - EX28DRAFT_0790 0.19 -2.4
790,274 - EX28DRAFT_0790 0.19 +0.4
790,430 + EX28DRAFT_0790 0.23 -0.1
790,557 - EX28DRAFT_0790 0.26 +0.9
790,671 - EX28DRAFT_0790 0.30 -0.1
790,718 + EX28DRAFT_0790 0.31 +0.3
790,718 + EX28DRAFT_0790 0.31 +1.0
790,778 + EX28DRAFT_0790 0.32 +0.7
790,779 - EX28DRAFT_0790 0.33 -0.1
790,937 - EX28DRAFT_0790 0.37 +1.6
790,937 - EX28DRAFT_0790 0.37 -1.1
791,106 - EX28DRAFT_0790 0.42 -0.3
791,411 + EX28DRAFT_0790 0.50 +0.1
791,417 + EX28DRAFT_0790 0.50 -0.0
791,417 + EX28DRAFT_0790 0.50 +0.3
791,417 + EX28DRAFT_0790 0.50 +2.0
791,417 + EX28DRAFT_0790 0.50 +0.0
791,417 + EX28DRAFT_0790 0.50 +0.3
791,418 - EX28DRAFT_0790 0.50 -0.2
791,447 + EX28DRAFT_0790 0.51 -0.4
791,463 - EX28DRAFT_0790 0.51 -1.2
791,811 - EX28DRAFT_0790 0.61 +0.2
791,811 - EX28DRAFT_0790 0.61 +0.6
791,812 + EX28DRAFT_0790 0.61 +0.5
791,921 - EX28DRAFT_0790 0.64 +0.4
791,954 + EX28DRAFT_0790 0.65 +0.8
791,955 - EX28DRAFT_0790 0.65 +0.5
791,955 - EX28DRAFT_0790 0.65 -0.4
792,553 + EX28DRAFT_0790 0.81 +0.2
792,709 + EX28DRAFT_0790 0.86 +0.4
792,710 - EX28DRAFT_0790 0.86 +0.0
792,719 - EX28DRAFT_0790 0.86 +0.2
792,743 - EX28DRAFT_0790 0.87 +0.3
792,761 - EX28DRAFT_0790 0.87 +1.5
793,003 - +0.5
793,239 - -0.4
793,286 - +0.2
793,807 - EX28DRAFT_0791 0.79 +1.0
793,863 - EX28DRAFT_0791 0.87 +0.6
793,967 - +1.3
793,973 - +0.6
794,031 - +0.5
794,141 + EX28DRAFT_0792 0.17 -1.6
794,142 - EX28DRAFT_0792 0.17 +1.4
794,182 - EX28DRAFT_0792 0.21 +0.8

Or see this region's nucleotide sequence