Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0775 and EX28DRAFT_0776 are separated by 115 nucleotides EX28DRAFT_0776 and EX28DRAFT_0777 are separated by 48 nucleotides EX28DRAFT_0777 and EX28DRAFT_0778 are separated by 0 nucleotides EX28DRAFT_0778 and EX28DRAFT_0779 overlap by 1 nucleotides
EX28DRAFT_0775: EX28DRAFT_0775 - AraC-type DNA-binding domain-containing proteins, at 773,826 to 774,782
_0775
EX28DRAFT_0776: EX28DRAFT_0776 - Arabinose efflux permease, at 774,898 to 776,085
_0776
EX28DRAFT_0777: EX28DRAFT_0777 - type VI secretion system effector, Hcp1 family, at 776,134 to 776,613
_0777
EX28DRAFT_0778: EX28DRAFT_0778 - hypothetical protein, at 776,614 to 776,835
_0778
EX28DRAFT_0779: EX28DRAFT_0779 - hypothetical protein, at 776,835 to 777,539
_0779
Position (kb) 774
775
776
777 Strain fitness (log2 ratio) -2
-1
0
1 at 774.133 kb on + strand, within EX28DRAFT_0775 at 774.133 kb on + strand, within EX28DRAFT_0775 at 774.516 kb on - strand, within EX28DRAFT_0775 at 774.518 kb on + strand, within EX28DRAFT_0775 at 774.518 kb on + strand, within EX28DRAFT_0775 at 774.518 kb on + strand, within EX28DRAFT_0775 at 774.519 kb on - strand, within EX28DRAFT_0775 at 774.567 kb on - strand, within EX28DRAFT_0775 at 774.802 kb on - strand at 774.820 kb on - strand at 774.821 kb on + strand at 774.851 kb on + strand at 774.852 kb on - strand at 774.961 kb on + strand at 775.199 kb on + strand, within EX28DRAFT_0776 at 775.314 kb on + strand, within EX28DRAFT_0776 at 775.314 kb on + strand, within EX28DRAFT_0776 at 775.315 kb on - strand, within EX28DRAFT_0776 at 775.391 kb on - strand, within EX28DRAFT_0776 at 776.116 kb on + strand at 776.116 kb on + strand at 776.264 kb on - strand, within EX28DRAFT_0777 at 776.596 kb on - strand at 776.616 kb on - strand at 776.662 kb on + strand, within EX28DRAFT_0778 at 776.850 kb on - strand at 776.890 kb on - strand at 776.894 kb on + strand at 776.936 kb on - strand, within EX28DRAFT_0779 at 777.055 kb on - strand, within EX28DRAFT_0779
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 774,133 + EX28DRAFT_0775 0.32 +0.5 774,133 + EX28DRAFT_0775 0.32 +0.5 774,516 - EX28DRAFT_0775 0.72 -0.2 774,518 + EX28DRAFT_0775 0.72 +0.2 774,518 + EX28DRAFT_0775 0.72 +0.5 774,518 + EX28DRAFT_0775 0.72 -0.0 774,519 - EX28DRAFT_0775 0.72 -0.5 774,567 - EX28DRAFT_0775 0.77 -0.8 774,802 - +1.3 774,820 - -0.7 774,821 + +0.1 774,851 + +0.3 774,852 - +0.2 774,961 + +0.1 775,199 + EX28DRAFT_0776 0.25 -0.1 775,314 + EX28DRAFT_0776 0.35 +0.0 775,314 + EX28DRAFT_0776 0.35 +0.5 775,315 - EX28DRAFT_0776 0.35 +0.1 775,391 - EX28DRAFT_0776 0.41 +0.1 776,116 + -1.3 776,116 + +0.5 776,264 - EX28DRAFT_0777 0.27 -0.6 776,596 - -0.1 776,616 - +0.1 776,662 + EX28DRAFT_0778 0.22 -0.4 776,850 - -2.6 776,890 - -0.1 776,894 + -0.1 776,936 - EX28DRAFT_0779 0.14 -0.0 777,055 - EX28DRAFT_0779 0.31 -1.5
Or see this region's nucleotide sequence