Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0734

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0733 and EX28DRAFT_0734 are separated by 506 nucleotidesEX28DRAFT_0734 and EX28DRAFT_0735 overlap by 286 nucleotidesEX28DRAFT_0735 and EX28DRAFT_0736 are separated by 219 nucleotides EX28DRAFT_0733: EX28DRAFT_0733 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 730,693 to 731,682 _0733 EX28DRAFT_0734: EX28DRAFT_0734 - RNA, at 732,189 to 732,651 _0734 EX28DRAFT_0735: EX28DRAFT_0735 - Cold shock proteins, at 732,366 to 732,575 _0735 EX28DRAFT_0736: EX28DRAFT_0736 - Cell division protein FtsI/penicillin-binding protein 2, at 732,795 to 734,513 _0736 Position (kb) 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 731.238 kb on + strand, within EX28DRAFT_0733at 731.238 kb on + strand, within EX28DRAFT_0733at 731.267 kb on + strand, within EX28DRAFT_0733at 731.381 kb on - strand, within EX28DRAFT_0733at 731.422 kb on - strand, within EX28DRAFT_0733at 731.444 kb on + strand, within EX28DRAFT_0733at 731.453 kb on - strand, within EX28DRAFT_0733at 731.484 kb on + strand, within EX28DRAFT_0733at 731.668 kb on + strandat 731.697 kb on + strandat 731.704 kb on + strandat 731.706 kb on + strandat 731.706 kb on + strandat 731.992 kb on - strandat 732.078 kb on + strandat 732.079 kb on - strandat 732.161 kb on + strandat 732.161 kb on + strandat 732.208 kb on - strandat 732.280 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.286 kb on - strand, within EX28DRAFT_0734at 732.300 kb on + strand, within EX28DRAFT_0734at 732.377 kb on + strandat 732.389 kb on + strandat 732.457 kb on + strandat 732.569 kb on + strandat 732.602 kb on - strandat 732.621 kb on + strandat 732.659 kb on - strandat 732.670 kb on + strandat 732.692 kb on - strandat 732.695 kb on - strandat 732.860 kb on - strandat 732.864 kb on - strandat 732.947 kb on + strandat 732.948 kb on - strandat 732.994 kb on + strand, within EX28DRAFT_0736at 732.995 kb on - strand, within EX28DRAFT_0736at 733.058 kb on + strand, within EX28DRAFT_0736at 733.186 kb on - strand, within EX28DRAFT_0736at 733.463 kb on + strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.569 kb on - strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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731,238 + EX28DRAFT_0733 0.55 +0.2
731,238 + EX28DRAFT_0733 0.55 -1.1
731,267 + EX28DRAFT_0733 0.58 +0.9
731,381 - EX28DRAFT_0733 0.69 -0.2
731,422 - EX28DRAFT_0733 0.74 -0.0
731,444 + EX28DRAFT_0733 0.76 -0.4
731,453 - EX28DRAFT_0733 0.77 +0.9
731,484 + EX28DRAFT_0733 0.80 +0.7
731,668 + -1.1
731,697 + -1.8
731,704 + -0.9
731,706 + -2.7
731,706 + -0.5
731,992 - -1.0
732,078 + +0.0
732,079 - -1.2
732,161 + +1.5
732,161 + +1.2
732,208 - +0.8
732,280 + EX28DRAFT_0734 0.20 +1.9
732,282 + EX28DRAFT_0734 0.20 +1.6
732,282 + EX28DRAFT_0734 0.20 +1.6
732,282 + EX28DRAFT_0734 0.20 +1.3
732,282 + EX28DRAFT_0734 0.20 +0.8
732,282 + EX28DRAFT_0734 0.20 +1.4
732,286 - EX28DRAFT_0734 0.21 +1.4
732,300 + EX28DRAFT_0734 0.24 +1.4
732,377 + +1.9
732,389 + +2.0
732,457 + +1.2
732,569 + +0.5
732,602 - +0.9
732,621 + -0.1
732,659 - -0.1
732,670 + +0.9
732,692 - -0.7
732,695 - -0.2
732,860 - -2.1
732,864 - -0.4
732,947 + +0.5
732,948 - -0.2
732,994 + EX28DRAFT_0736 0.12 +0.1
732,995 - EX28DRAFT_0736 0.12 +0.3
733,058 + EX28DRAFT_0736 0.15 -0.8
733,186 - EX28DRAFT_0736 0.23 +0.1
733,463 + EX28DRAFT_0736 0.39 -0.6
733,464 - EX28DRAFT_0736 0.39 +0.6
733,464 - EX28DRAFT_0736 0.39 +0.5
733,474 + EX28DRAFT_0736 0.39 -0.6
733,474 + EX28DRAFT_0736 0.39 -0.1
733,474 + EX28DRAFT_0736 0.39 +0.1
733,475 - EX28DRAFT_0736 0.40 -0.2
733,475 - EX28DRAFT_0736 0.40 -2.2
733,569 - EX28DRAFT_0736 0.45 -0.4
733,588 + EX28DRAFT_0736 0.46 +0.0
733,588 + EX28DRAFT_0736 0.46 +0.8

Or see this region's nucleotide sequence