Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0705 and EX28DRAFT_0706 are separated by 39 nucleotides EX28DRAFT_0706 and EX28DRAFT_0707 are separated by 42 nucleotides EX28DRAFT_0707 and EX28DRAFT_0708 are separated by 170 nucleotides EX28DRAFT_0708 and EX28DRAFT_0709 are separated by 85 nucleotides
EX28DRAFT_0705: EX28DRAFT_0705 - 6-phosphogluconate dehydratase (EC 4.2.1.12), at 703,606 to 705,417
_0705
EX28DRAFT_0706: EX28DRAFT_0706 - Entner-Doudoroff aldolase, at 705,457 to 706,098
_0706
EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319
_0707
EX28DRAFT_0708: EX28DRAFT_0708 - Uncharacterized protein conserved in bacteria, at 707,490 to 708,137
_0708
EX28DRAFT_0709: EX28DRAFT_0709 - Protease II, at 708,223 to 710,283
_0709
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 705.194 kb on - strand, within EX28DRAFT_0705 at 705.263 kb on + strand at 705.264 kb on - strand at 705.310 kb on - strand at 705.405 kb on + strand at 705.406 kb on - strand at 705.408 kb on + strand at 705.415 kb on + strand at 705.431 kb on + strand at 705.431 kb on + strand at 705.545 kb on + strand, within EX28DRAFT_0706 at 705.923 kb on + strand, within EX28DRAFT_0706 at 705.962 kb on - strand, within EX28DRAFT_0706 at 706.097 kb on - strand at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.409 kb on - strand, within EX28DRAFT_0707 at 706.818 kb on + strand, within EX28DRAFT_0707 at 706.819 kb on - strand, within EX28DRAFT_0707 at 707.106 kb on + strand, within EX28DRAFT_0707 at 707.150 kb on + strand, within EX28DRAFT_0707 at 707.151 kb on - strand, within EX28DRAFT_0707 at 707.151 kb on - strand, within EX28DRAFT_0707 at 707.219 kb on - strand at 707.320 kb on - strand at 707.475 kb on + strand at 707.643 kb on + strand, within EX28DRAFT_0708 at 707.649 kb on - strand, within EX28DRAFT_0708 at 707.706 kb on + strand, within EX28DRAFT_0708 at 707.831 kb on + strand, within EX28DRAFT_0708 at 707.832 kb on - strand, within EX28DRAFT_0708 at 707.920 kb on + strand, within EX28DRAFT_0708 at 707.921 kb on - strand, within EX28DRAFT_0708 at 707.989 kb on - strand, within EX28DRAFT_0708 at 708.045 kb on - strand, within EX28DRAFT_0708 at 708.192 kb on + strand at 708.193 kb on - strand at 708.193 kb on - strand at 708.194 kb on + strand at 708.194 kb on + strand at 708.194 kb on + strand at 708.194 kb on + strand at 708.194 kb on + strand at 708.194 kb on + strand at 708.195 kb on - strand at 708.195 kb on - strand at 708.202 kb on - strand at 708.243 kb on + strand at 708.289 kb on + strand at 708.289 kb on + strand at 708.289 kb on + strand at 708.289 kb on + strand at 708.290 kb on - strand at 708.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 705,194 - EX28DRAFT_0705 0.88 -0.4 705,263 + +0.8 705,264 - +0.3 705,310 - +0.7 705,405 + +0.3 705,406 - -0.9 705,408 + -0.4 705,415 + -1.2 705,431 + +5.0 705,431 + +0.3 705,545 + EX28DRAFT_0706 0.14 -0.1 705,923 + EX28DRAFT_0706 0.73 -1.2 705,962 - EX28DRAFT_0706 0.79 -0.6 706,097 - +0.5 706,270 + EX28DRAFT_0707 0.11 +1.5 706,270 + EX28DRAFT_0707 0.11 -0.2 706,409 - EX28DRAFT_0707 0.23 +0.2 706,818 + EX28DRAFT_0707 0.57 -0.5 706,819 - EX28DRAFT_0707 0.58 -0.5 707,106 + EX28DRAFT_0707 0.82 -2.5 707,150 + EX28DRAFT_0707 0.86 -0.5 707,151 - EX28DRAFT_0707 0.86 -0.4 707,151 - EX28DRAFT_0707 0.86 -1.3 707,219 - -0.7 707,320 - -0.7 707,475 + -0.9 707,643 + EX28DRAFT_0708 0.24 +0.5 707,649 - EX28DRAFT_0708 0.25 -0.0 707,706 + EX28DRAFT_0708 0.33 +0.8 707,831 + EX28DRAFT_0708 0.53 -0.6 707,832 - EX28DRAFT_0708 0.53 +0.2 707,920 + EX28DRAFT_0708 0.66 +0.0 707,921 - EX28DRAFT_0708 0.67 -0.8 707,989 - EX28DRAFT_0708 0.77 -0.6 708,045 - EX28DRAFT_0708 0.86 -0.3 708,192 + -0.1 708,193 - -0.2 708,193 - +0.2 708,194 + +1.1 708,194 + +0.8 708,194 + -1.1 708,194 + -1.2 708,194 + -0.2 708,194 + +2.0 708,195 - -2.2 708,195 - -2.9 708,202 - +3.0 708,243 + -0.4 708,289 + -0.1 708,289 + +1.5 708,289 + -0.3 708,289 + -0.3 708,290 - +0.1 708,290 - +0.4
Or see this region's nucleotide sequence