Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0704 and EX28DRAFT_0705 are separated by 232 nucleotides EX28DRAFT_0705 and EX28DRAFT_0706 are separated by 39 nucleotides EX28DRAFT_0706 and EX28DRAFT_0707 are separated by 42 nucleotides
EX28DRAFT_0704: EX28DRAFT_0704 - glucose-6-phosphate 1-dehydrogenase, at 701,898 to 703,373
_0704
EX28DRAFT_0705: EX28DRAFT_0705 - 6-phosphogluconate dehydratase (EC 4.2.1.12), at 703,606 to 705,417
_0705
EX28DRAFT_0706: EX28DRAFT_0706 - Entner-Doudoroff aldolase, at 705,457 to 706,098
_0706
EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319
_0707
Position (kb) 703
704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 703.371 kb on + strand at 703.376 kb on + strand at 703.819 kb on - strand, within EX28DRAFT_0705 at 703.825 kb on + strand, within EX28DRAFT_0705 at 703.826 kb on - strand, within EX28DRAFT_0705 at 703.834 kb on - strand, within EX28DRAFT_0705 at 703.929 kb on - strand, within EX28DRAFT_0705 at 704.054 kb on - strand, within EX28DRAFT_0705 at 704.195 kb on - strand, within EX28DRAFT_0705 at 704.248 kb on + strand, within EX28DRAFT_0705 at 704.249 kb on - strand, within EX28DRAFT_0705 at 704.249 kb on - strand, within EX28DRAFT_0705 at 704.269 kb on - strand, within EX28DRAFT_0705 at 704.269 kb on - strand, within EX28DRAFT_0705 at 704.269 kb on - strand, within EX28DRAFT_0705 at 704.275 kb on + strand, within EX28DRAFT_0705 at 704.275 kb on + strand, within EX28DRAFT_0705 at 704.276 kb on - strand, within EX28DRAFT_0705 at 704.313 kb on + strand, within EX28DRAFT_0705 at 704.313 kb on + strand, within EX28DRAFT_0705 at 704.560 kb on - strand, within EX28DRAFT_0705 at 704.591 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 705.043 kb on - strand, within EX28DRAFT_0705 at 705.065 kb on + strand, within EX28DRAFT_0705 at 705.066 kb on - strand, within EX28DRAFT_0705 at 705.070 kb on - strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.076 kb on - strand, within EX28DRAFT_0705 at 705.194 kb on - strand, within EX28DRAFT_0705 at 705.263 kb on + strand at 705.264 kb on - strand at 705.310 kb on - strand at 705.405 kb on + strand at 705.406 kb on - strand at 705.408 kb on + strand at 705.415 kb on + strand at 705.431 kb on + strand at 705.431 kb on + strand at 705.545 kb on + strand, within EX28DRAFT_0706 at 705.923 kb on + strand, within EX28DRAFT_0706 at 705.962 kb on - strand, within EX28DRAFT_0706 at 706.097 kb on - strand at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.409 kb on - strand, within EX28DRAFT_0707
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 703,371 + -0.0 703,376 + -1.4 703,819 - EX28DRAFT_0705 0.12 -1.0 703,825 + EX28DRAFT_0705 0.12 +1.9 703,826 - EX28DRAFT_0705 0.12 -0.4 703,834 - EX28DRAFT_0705 0.13 -0.2 703,929 - EX28DRAFT_0705 0.18 +0.3 704,054 - EX28DRAFT_0705 0.25 +0.7 704,195 - EX28DRAFT_0705 0.33 -0.1 704,248 + EX28DRAFT_0705 0.35 -0.2 704,249 - EX28DRAFT_0705 0.35 +1.0 704,249 - EX28DRAFT_0705 0.35 +0.4 704,269 - EX28DRAFT_0705 0.37 +2.5 704,269 - EX28DRAFT_0705 0.37 -1.8 704,269 - EX28DRAFT_0705 0.37 +0.6 704,275 + EX28DRAFT_0705 0.37 -0.2 704,275 + EX28DRAFT_0705 0.37 +0.8 704,276 - EX28DRAFT_0705 0.37 -0.1 704,313 + EX28DRAFT_0705 0.39 -0.4 704,313 + EX28DRAFT_0705 0.39 -1.2 704,560 - EX28DRAFT_0705 0.53 +0.2 704,591 + EX28DRAFT_0705 0.54 -0.3 704,975 + EX28DRAFT_0705 0.76 +0.1 704,975 + EX28DRAFT_0705 0.76 +0.4 704,975 + EX28DRAFT_0705 0.76 +0.4 704,976 - EX28DRAFT_0705 0.76 +0.1 704,976 - EX28DRAFT_0705 0.76 -0.6 705,043 - EX28DRAFT_0705 0.79 +1.3 705,065 + EX28DRAFT_0705 0.81 +0.2 705,066 - EX28DRAFT_0705 0.81 -0.6 705,070 - EX28DRAFT_0705 0.81 -0.3 705,075 + EX28DRAFT_0705 0.81 +1.1 705,075 + EX28DRAFT_0705 0.81 +0.1 705,076 - EX28DRAFT_0705 0.81 +0.3 705,194 - EX28DRAFT_0705 0.88 -0.4 705,263 + +0.8 705,264 - +0.3 705,310 - +0.7 705,405 + +0.3 705,406 - -0.9 705,408 + -0.4 705,415 + -1.2 705,431 + +5.0 705,431 + +0.3 705,545 + EX28DRAFT_0706 0.14 -0.1 705,923 + EX28DRAFT_0706 0.73 -1.2 705,962 - EX28DRAFT_0706 0.79 -0.6 706,097 - +0.5 706,270 + EX28DRAFT_0707 0.11 +1.5 706,270 + EX28DRAFT_0707 0.11 -0.2 706,409 - EX28DRAFT_0707 0.23 +0.2
Or see this region's nucleotide sequence