Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0680

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0679 and EX28DRAFT_0680 are separated by 508 nucleotidesEX28DRAFT_0680 and EX28DRAFT_0681 overlap by 8 nucleotides EX28DRAFT_0679: EX28DRAFT_0679 - P pilus assembly protein, pilin FimA, at 676,598 to 677,173 _0679 EX28DRAFT_0680: EX28DRAFT_0680 - flagellar biosynthetic protein FlhB, at 677,682 to 678,830 _0680 EX28DRAFT_0681: EX28DRAFT_0681 - flagellar biosynthesis protein FlhA, at 678,823 to 680,901 _0681 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 676.729 kb on - strand, within EX28DRAFT_0679at 676.729 kb on - strand, within EX28DRAFT_0679at 676.765 kb on + strand, within EX28DRAFT_0679at 676.855 kb on + strand, within EX28DRAFT_0679at 676.957 kb on + strand, within EX28DRAFT_0679at 676.957 kb on + strand, within EX28DRAFT_0679at 676.958 kb on - strand, within EX28DRAFT_0679at 676.996 kb on + strand, within EX28DRAFT_0679at 676.996 kb on + strand, within EX28DRAFT_0679at 677.002 kb on - strand, within EX28DRAFT_0679at 677.021 kb on - strand, within EX28DRAFT_0679at 677.540 kb on + strandat 677.540 kb on + strandat 677.541 kb on - strandat 677.541 kb on - strandat 677.607 kb on - strandat 677.662 kb on + strandat 677.776 kb on + strandat 677.800 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.814 kb on - strand, within EX28DRAFT_0680at 677.925 kb on - strand, within EX28DRAFT_0680at 677.925 kb on - strand, within EX28DRAFT_0680at 677.933 kb on + strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 678.165 kb on + strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.175 kb on - strand, within EX28DRAFT_0680at 678.201 kb on - strand, within EX28DRAFT_0680at 678.318 kb on + strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.320 kb on + strand, within EX28DRAFT_0680at 678.321 kb on - strand, within EX28DRAFT_0680at 678.369 kb on + strand, within EX28DRAFT_0680at 678.370 kb on - strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.398 kb on - strand, within EX28DRAFT_0680at 678.495 kb on + strand, within EX28DRAFT_0680at 678.496 kb on - strand, within EX28DRAFT_0680at 678.688 kb on - strand, within EX28DRAFT_0680at 678.911 kb on + strandat 678.912 kb on - strandat 678.976 kb on - strandat 678.976 kb on - strandat 679.062 kb on + strand, within EX28DRAFT_0681at 679.104 kb on + strand, within EX28DRAFT_0681at 679.147 kb on - strand, within EX28DRAFT_0681at 679.236 kb on + strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.243 kb on - strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.348 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.546 kb on + strand, within EX28DRAFT_0681at 679.548 kb on + strand, within EX28DRAFT_0681at 679.771 kb on - strand, within EX28DRAFT_0681

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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676,729 - EX28DRAFT_0679 0.23 +0.0
676,729 - EX28DRAFT_0679 0.23 -2.1
676,765 + EX28DRAFT_0679 0.29 -1.7
676,855 + EX28DRAFT_0679 0.45 +0.6
676,957 + EX28DRAFT_0679 0.62 +1.8
676,957 + EX28DRAFT_0679 0.62 +0.3
676,958 - EX28DRAFT_0679 0.62 -0.3
676,996 + EX28DRAFT_0679 0.69 -2.6
676,996 + EX28DRAFT_0679 0.69 -0.0
677,002 - EX28DRAFT_0679 0.70 -0.4
677,021 - EX28DRAFT_0679 0.73 +0.5
677,540 + +0.8
677,540 + +0.2
677,541 - +0.3
677,541 - -0.7
677,607 - -0.1
677,662 + +0.2
677,776 + -1.1
677,800 + EX28DRAFT_0680 0.10 -1.6
677,813 + EX28DRAFT_0680 0.11 +0.1
677,813 + EX28DRAFT_0680 0.11 +0.0
677,813 + EX28DRAFT_0680 0.11 -0.1
677,814 - EX28DRAFT_0680 0.11 -2.6
677,925 - EX28DRAFT_0680 0.21 -0.0
677,925 - EX28DRAFT_0680 0.21 -0.0
677,933 + EX28DRAFT_0680 0.22 +0.2
677,934 - EX28DRAFT_0680 0.22 -2.4
677,934 - EX28DRAFT_0680 0.22 +0.8
678,165 + EX28DRAFT_0680 0.42 -0.1
678,166 - EX28DRAFT_0680 0.42 -0.4
678,166 - EX28DRAFT_0680 0.42 -0.3
678,175 - EX28DRAFT_0680 0.43 -0.7
678,201 - EX28DRAFT_0680 0.45 -1.0
678,318 + EX28DRAFT_0680 0.55 -0.5
678,319 - EX28DRAFT_0680 0.55 -3.4
678,319 - EX28DRAFT_0680 0.55 -0.3
678,319 - EX28DRAFT_0680 0.55 +0.1
678,319 - EX28DRAFT_0680 0.55 -1.3
678,320 + EX28DRAFT_0680 0.56 +0.5
678,321 - EX28DRAFT_0680 0.56 -0.1
678,369 + EX28DRAFT_0680 0.60 -0.2
678,370 - EX28DRAFT_0680 0.60 -0.5
678,371 + EX28DRAFT_0680 0.60 -0.0
678,371 + EX28DRAFT_0680 0.60 -0.2
678,371 + EX28DRAFT_0680 0.60 -0.8
678,372 - EX28DRAFT_0680 0.60 +0.3
678,372 - EX28DRAFT_0680 0.60 +0.1
678,372 - EX28DRAFT_0680 0.60 -0.4
678,372 - EX28DRAFT_0680 0.60 +0.1
678,398 - EX28DRAFT_0680 0.62 -3.5
678,495 + EX28DRAFT_0680 0.71 +0.8
678,496 - EX28DRAFT_0680 0.71 -1.8
678,688 - EX28DRAFT_0680 0.88 +0.0
678,911 + -0.4
678,912 - -0.2
678,976 - -0.8
678,976 - -0.4
679,062 + EX28DRAFT_0681 0.11 -0.5
679,104 + EX28DRAFT_0681 0.14 +1.1
679,147 - EX28DRAFT_0681 0.16 +0.1
679,236 + EX28DRAFT_0681 0.20 -0.2
679,237 - EX28DRAFT_0681 0.20 -0.2
679,237 - EX28DRAFT_0681 0.20 -0.0
679,243 - EX28DRAFT_0681 0.20 +0.1
679,347 + EX28DRAFT_0681 0.25 -0.5
679,347 + EX28DRAFT_0681 0.25 +0.1
679,348 - EX28DRAFT_0681 0.25 +0.1
679,406 - EX28DRAFT_0681 0.28 -0.3
679,406 - EX28DRAFT_0681 0.28 +0.2
679,508 + EX28DRAFT_0681 0.33 +0.0
679,508 + EX28DRAFT_0681 0.33 +0.4
679,508 + EX28DRAFT_0681 0.33 -0.0
679,508 + EX28DRAFT_0681 0.33 +0.0
679,508 + EX28DRAFT_0681 0.33 -0.6
679,509 - EX28DRAFT_0681 0.33 -0.6
679,509 - EX28DRAFT_0681 0.33 +0.0
679,546 + EX28DRAFT_0681 0.35 -0.2
679,548 + EX28DRAFT_0681 0.35 -0.1
679,771 - EX28DRAFT_0681 0.46 +0.2

Or see this region's nucleotide sequence