Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0676

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0674 and EX28DRAFT_0675 are separated by 10 nucleotidesEX28DRAFT_0675 and EX28DRAFT_0676 are separated by 48 nucleotidesEX28DRAFT_0676 and EX28DRAFT_0677 are separated by 4 nucleotides EX28DRAFT_0674: EX28DRAFT_0674 - Response regulator receiver domain, at 670,956 to 671,345 _0674 EX28DRAFT_0675: EX28DRAFT_0675 - Chemotaxis protein, at 671,356 to 672,000 _0675 EX28DRAFT_0676: EX28DRAFT_0676 - P pilus assembly protein, pilin FimA, at 672,049 to 673,215 _0676 EX28DRAFT_0677: EX28DRAFT_0677 - P pilus assembly protein, porin PapC, at 673,220 to 675,676 _0677 Position (kb) 672 673 674Strain fitness (log2 ratio) -2 -1 0 1at 671.117 kb on + strand, within EX28DRAFT_0674at 671.139 kb on - strand, within EX28DRAFT_0674at 671.271 kb on + strand, within EX28DRAFT_0674at 671.524 kb on + strand, within EX28DRAFT_0675at 671.525 kb on - strand, within EX28DRAFT_0675at 672.042 kb on - strandat 672.185 kb on + strand, within EX28DRAFT_0676at 672.185 kb on + strand, within EX28DRAFT_0676at 672.185 kb on + strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.189 kb on + strand, within EX28DRAFT_0676at 672.189 kb on + strand, within EX28DRAFT_0676at 672.190 kb on - strand, within EX28DRAFT_0676at 672.224 kb on + strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.227 kb on - strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.270 kb on - strand, within EX28DRAFT_0676at 672.345 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.672 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.680 kb on - strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.852 kb on - strand, within EX28DRAFT_0676at 672.941 kb on + strand, within EX28DRAFT_0676at 672.961 kb on + strand, within EX28DRAFT_0676at 672.963 kb on + strand, within EX28DRAFT_0676at 673.031 kb on + strand, within EX28DRAFT_0676at 673.031 kb on + strand, within EX28DRAFT_0676at 673.032 kb on - strand, within EX28DRAFT_0676at 673.089 kb on - strand, within EX28DRAFT_0676at 673.113 kb on + strandat 673.121 kb on - strandat 673.205 kb on - strandat 673.205 kb on - strandat 673.206 kb on + strandat 673.207 kb on - strandat 673.221 kb on + strandat 673.221 kb on + strandat 673.221 kb on + strandat 673.222 kb on - strandat 673.375 kb on - strandat 673.475 kb on - strand, within EX28DRAFT_0677at 673.604 kb on - strand, within EX28DRAFT_0677at 673.791 kb on + strand, within EX28DRAFT_0677at 673.811 kb on - strand, within EX28DRAFT_0677at 673.824 kb on + strand, within EX28DRAFT_0677at 673.824 kb on + strand, within EX28DRAFT_0677at 673.827 kb on + strand, within EX28DRAFT_0677at 673.848 kb on + strand, within EX28DRAFT_0677at 673.923 kb on + strand, within EX28DRAFT_0677at 673.924 kb on - strand, within EX28DRAFT_0677at 673.980 kb on + strand, within EX28DRAFT_0677at 673.980 kb on + strand, within EX28DRAFT_0677at 674.007 kb on + strand, within EX28DRAFT_0677at 674.007 kb on + strand, within EX28DRAFT_0677at 674.008 kb on - strand, within EX28DRAFT_0677at 674.011 kb on + strand, within EX28DRAFT_0677at 674.011 kb on + strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.058 kb on - strand, within EX28DRAFT_0677at 674.100 kb on + strand, within EX28DRAFT_0677at 674.100 kb on + strand, within EX28DRAFT_0677at 674.101 kb on - strand, within EX28DRAFT_0677at 674.101 kb on - strand, within EX28DRAFT_0677at 674.105 kb on - strand, within EX28DRAFT_0677at 674.105 kb on - strand, within EX28DRAFT_0677at 674.119 kb on - strand, within EX28DRAFT_0677at 674.140 kb on + strand, within EX28DRAFT_0677at 674.145 kb on - strand, within EX28DRAFT_0677at 674.212 kb on - strand, within EX28DRAFT_0677at 674.212 kb on - strand, within EX28DRAFT_0677

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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671,117 + EX28DRAFT_0674 0.41 -0.1
671,139 - EX28DRAFT_0674 0.47 -0.8
671,271 + EX28DRAFT_0674 0.81 -0.4
671,524 + EX28DRAFT_0675 0.26 -0.3
671,525 - EX28DRAFT_0675 0.26 +0.1
672,042 - -0.0
672,185 + EX28DRAFT_0676 0.12 -0.3
672,185 + EX28DRAFT_0676 0.12 -0.4
672,185 + EX28DRAFT_0676 0.12 -0.5
672,186 - EX28DRAFT_0676 0.12 +0.3
672,186 - EX28DRAFT_0676 0.12 -0.0
672,186 - EX28DRAFT_0676 0.12 -0.6
672,189 + EX28DRAFT_0676 0.12 -1.3
672,189 + EX28DRAFT_0676 0.12 +0.3
672,190 - EX28DRAFT_0676 0.12 +0.5
672,224 + EX28DRAFT_0676 0.15 +0.1
672,225 - EX28DRAFT_0676 0.15 +0.4
672,225 - EX28DRAFT_0676 0.15 +0.1
672,226 + EX28DRAFT_0676 0.15 -0.6
672,226 + EX28DRAFT_0676 0.15 -0.0
672,226 + EX28DRAFT_0676 0.15 -0.1
672,226 + EX28DRAFT_0676 0.15 -1.7
672,227 - EX28DRAFT_0676 0.15 -0.4
672,269 + EX28DRAFT_0676 0.19 -0.5
672,269 + EX28DRAFT_0676 0.19 -0.1
672,270 - EX28DRAFT_0676 0.19 -0.5
672,345 + EX28DRAFT_0676 0.25 -0.8
672,366 + EX28DRAFT_0676 0.27 -0.1
672,366 + EX28DRAFT_0676 0.27 -0.7
672,672 + EX28DRAFT_0676 0.53 +0.7
672,679 + EX28DRAFT_0676 0.54 -0.3
672,679 + EX28DRAFT_0676 0.54 +0.0
672,680 - EX28DRAFT_0676 0.54 -0.5
672,771 + EX28DRAFT_0676 0.62 +0.5
672,771 + EX28DRAFT_0676 0.62 +0.6
672,774 + EX28DRAFT_0676 0.62 +0.3
672,774 + EX28DRAFT_0676 0.62 +0.2
672,852 - EX28DRAFT_0676 0.69 -0.2
672,941 + EX28DRAFT_0676 0.76 +0.5
672,961 + EX28DRAFT_0676 0.78 +0.0
672,963 + EX28DRAFT_0676 0.78 -1.6
673,031 + EX28DRAFT_0676 0.84 -1.3
673,031 + EX28DRAFT_0676 0.84 -0.3
673,032 - EX28DRAFT_0676 0.84 +0.4
673,089 - EX28DRAFT_0676 0.89 +0.1
673,113 + -0.4
673,121 - +0.0
673,205 - +0.6
673,205 - +1.4
673,206 + +0.0
673,207 - -0.2
673,221 + -0.6
673,221 + -0.9
673,221 + -0.1
673,222 - +1.4
673,375 - -0.6
673,475 - EX28DRAFT_0677 0.10 +0.1
673,604 - EX28DRAFT_0677 0.16 -0.2
673,791 + EX28DRAFT_0677 0.23 +0.2
673,811 - EX28DRAFT_0677 0.24 +0.0
673,824 + EX28DRAFT_0677 0.25 +0.5
673,824 + EX28DRAFT_0677 0.25 +0.8
673,827 + EX28DRAFT_0677 0.25 +0.6
673,848 + EX28DRAFT_0677 0.26 +0.6
673,923 + EX28DRAFT_0677 0.29 +0.1
673,924 - EX28DRAFT_0677 0.29 +0.6
673,980 + EX28DRAFT_0677 0.31 -0.2
673,980 + EX28DRAFT_0677 0.31 +0.1
674,007 + EX28DRAFT_0677 0.32 -0.2
674,007 + EX28DRAFT_0677 0.32 +0.0
674,008 - EX28DRAFT_0677 0.32 -0.2
674,011 + EX28DRAFT_0677 0.32 +0.4
674,011 + EX28DRAFT_0677 0.32 -2.1
674,012 - EX28DRAFT_0677 0.32 +0.6
674,012 - EX28DRAFT_0677 0.32 +0.1
674,012 - EX28DRAFT_0677 0.32 +0.4
674,058 - EX28DRAFT_0677 0.34 +0.1
674,100 + EX28DRAFT_0677 0.36 +0.0
674,100 + EX28DRAFT_0677 0.36 -0.5
674,101 - EX28DRAFT_0677 0.36 +1.0
674,101 - EX28DRAFT_0677 0.36 -1.1
674,105 - EX28DRAFT_0677 0.36 -0.5
674,105 - EX28DRAFT_0677 0.36 +1.3
674,119 - EX28DRAFT_0677 0.37 +0.0
674,140 + EX28DRAFT_0677 0.37 -0.3
674,145 - EX28DRAFT_0677 0.38 -0.5
674,212 - EX28DRAFT_0677 0.40 +0.1
674,212 - EX28DRAFT_0677 0.40 -1.2

Or see this region's nucleotide sequence