Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0670

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0669 and EX28DRAFT_0670 are separated by 84 nucleotidesEX28DRAFT_0670 and EX28DRAFT_0671 are separated by 44 nucleotides EX28DRAFT_0669: EX28DRAFT_0669 - Uncharacterized secreted protein, at 664,646 to 665,608 _0669 EX28DRAFT_0670: EX28DRAFT_0670 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 665,693 to 667,360 _0670 EX28DRAFT_0671: EX28DRAFT_0671 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 667,405 to 669,006 _0671 Position (kb) 665 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 664.851 kb on - strand, within EX28DRAFT_0669at 664.984 kb on + strand, within EX28DRAFT_0669at 664.985 kb on - strand, within EX28DRAFT_0669at 664.991 kb on + strand, within EX28DRAFT_0669at 665.054 kb on + strand, within EX28DRAFT_0669at 665.126 kb on + strand, within EX28DRAFT_0669at 665.203 kb on - strand, within EX28DRAFT_0669at 665.203 kb on - strand, within EX28DRAFT_0669at 665.206 kb on + strand, within EX28DRAFT_0669at 665.206 kb on + strand, within EX28DRAFT_0669at 665.274 kb on + strand, within EX28DRAFT_0669at 665.317 kb on + strand, within EX28DRAFT_0669at 665.334 kb on - strand, within EX28DRAFT_0669at 665.336 kb on - strand, within EX28DRAFT_0669at 665.412 kb on - strand, within EX28DRAFT_0669at 665.420 kb on + strand, within EX28DRAFT_0669at 665.420 kb on + strand, within EX28DRAFT_0669at 665.420 kb on + strand, within EX28DRAFT_0669at 665.421 kb on - strand, within EX28DRAFT_0669at 665.421 kb on - strand, within EX28DRAFT_0669at 665.421 kb on - strand, within EX28DRAFT_0669at 665.422 kb on + strand, within EX28DRAFT_0669at 665.423 kb on - strand, within EX28DRAFT_0669at 665.423 kb on - strand, within EX28DRAFT_0669at 665.573 kb on + strandat 665.574 kb on - strandat 665.636 kb on - strandat 665.671 kb on + strandat 665.672 kb on - strandat 665.672 kb on - strandat 665.672 kb on - strandat 665.672 kb on - strandat 665.672 kb on - strandat 665.672 kb on - strandat 665.678 kb on - strandat 665.692 kb on + strandat 665.692 kb on + strandat 665.693 kb on - strandat 665.693 kb on - strandat 665.693 kb on - strandat 665.693 kb on - strandat 665.693 kb on - strandat 665.693 kb on - strandat 665.791 kb on - strandat 666.037 kb on + strand, within EX28DRAFT_0670at 666.080 kb on + strand, within EX28DRAFT_0670at 666.460 kb on + strand, within EX28DRAFT_0670at 666.460 kb on + strand, within EX28DRAFT_0670at 666.460 kb on + strand, within EX28DRAFT_0670at 666.518 kb on + strand, within EX28DRAFT_0670at 666.518 kb on + strand, within EX28DRAFT_0670at 666.518 kb on + strand, within EX28DRAFT_0670at 666.518 kb on + strand, within EX28DRAFT_0670at 666.518 kb on + strand, within EX28DRAFT_0670at 666.519 kb on - strand, within EX28DRAFT_0670at 666.519 kb on - strand, within EX28DRAFT_0670at 666.519 kb on - strand, within EX28DRAFT_0670at 666.519 kb on - strand, within EX28DRAFT_0670at 666.894 kb on + strand, within EX28DRAFT_0670at 666.894 kb on + strand, within EX28DRAFT_0670at 666.894 kb on + strand, within EX28DRAFT_0670at 666.895 kb on - strand, within EX28DRAFT_0670at 666.895 kb on - strand, within EX28DRAFT_0670at 666.895 kb on - strand, within EX28DRAFT_0670at 667.278 kb on - strandat 667.422 kb on + strandat 667.653 kb on + strand, within EX28DRAFT_0671at 667.789 kb on + strand, within EX28DRAFT_0671at 667.790 kb on - strand, within EX28DRAFT_0671at 667.894 kb on - strand, within EX28DRAFT_0671at 667.911 kb on + strand, within EX28DRAFT_0671at 667.957 kb on + strand, within EX28DRAFT_0671at 667.957 kb on + strand, within EX28DRAFT_0671at 668.215 kb on + strand, within EX28DRAFT_0671

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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664,851 - EX28DRAFT_0669 0.21 +1.7
664,984 + EX28DRAFT_0669 0.35 +0.8
664,985 - EX28DRAFT_0669 0.35 +1.0
664,991 + EX28DRAFT_0669 0.36 -2.3
665,054 + EX28DRAFT_0669 0.42 -0.5
665,126 + EX28DRAFT_0669 0.50 +1.1
665,203 - EX28DRAFT_0669 0.58 +0.6
665,203 - EX28DRAFT_0669 0.58 +1.4
665,206 + EX28DRAFT_0669 0.58 +0.5
665,206 + EX28DRAFT_0669 0.58 -0.2
665,274 + EX28DRAFT_0669 0.65 +0.5
665,317 + EX28DRAFT_0669 0.70 -0.0
665,334 - EX28DRAFT_0669 0.71 +0.1
665,336 - EX28DRAFT_0669 0.72 -0.5
665,412 - EX28DRAFT_0669 0.80 -0.3
665,420 + EX28DRAFT_0669 0.80 +0.2
665,420 + EX28DRAFT_0669 0.80 +3.6
665,420 + EX28DRAFT_0669 0.80 -0.3
665,421 - EX28DRAFT_0669 0.80 +0.4
665,421 - EX28DRAFT_0669 0.80 -0.2
665,421 - EX28DRAFT_0669 0.80 -0.4
665,422 + EX28DRAFT_0669 0.81 -0.3
665,423 - EX28DRAFT_0669 0.81 -0.8
665,423 - EX28DRAFT_0669 0.81 +1.0
665,573 + +0.7
665,574 - -0.2
665,636 - -0.5
665,671 + -0.8
665,672 - -0.2
665,672 - -0.2
665,672 - +0.2
665,672 - -0.3
665,672 - +0.7
665,672 - +0.2
665,678 - +0.9
665,692 + +0.1
665,692 + +0.7
665,693 - -0.9
665,693 - +0.1
665,693 - +0.9
665,693 - +0.0
665,693 - +0.4
665,693 - +0.2
665,791 - -2.6
666,037 + EX28DRAFT_0670 0.21 +3.1
666,080 + EX28DRAFT_0670 0.23 +0.0
666,460 + EX28DRAFT_0670 0.46 +0.1
666,460 + EX28DRAFT_0670 0.46 -0.5
666,460 + EX28DRAFT_0670 0.46 +0.4
666,518 + EX28DRAFT_0670 0.49 +0.5
666,518 + EX28DRAFT_0670 0.49 -0.1
666,518 + EX28DRAFT_0670 0.49 +1.3
666,518 + EX28DRAFT_0670 0.49 +0.3
666,518 + EX28DRAFT_0670 0.49 -0.2
666,519 - EX28DRAFT_0670 0.50 +1.5
666,519 - EX28DRAFT_0670 0.50 +0.2
666,519 - EX28DRAFT_0670 0.50 +0.2
666,519 - EX28DRAFT_0670 0.50 +0.5
666,894 + EX28DRAFT_0670 0.72 +1.1
666,894 + EX28DRAFT_0670 0.72 +0.2
666,894 + EX28DRAFT_0670 0.72 +0.4
666,895 - EX28DRAFT_0670 0.72 -0.5
666,895 - EX28DRAFT_0670 0.72 +0.3
666,895 - EX28DRAFT_0670 0.72 +0.1
667,278 - -0.5
667,422 + +0.2
667,653 + EX28DRAFT_0671 0.15 +0.3
667,789 + EX28DRAFT_0671 0.24 -1.7
667,790 - EX28DRAFT_0671 0.24 +0.0
667,894 - EX28DRAFT_0671 0.31 -0.5
667,911 + EX28DRAFT_0671 0.32 +0.3
667,957 + EX28DRAFT_0671 0.34 -0.5
667,957 + EX28DRAFT_0671 0.34 -0.8
668,215 + EX28DRAFT_0671 0.51 +0.0

Or see this region's nucleotide sequence