Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0657 and EX28DRAFT_0658 are separated by 794 nucleotides EX28DRAFT_0658 and EX28DRAFT_0659 are separated by 2 nucleotides EX28DRAFT_0659 and EX28DRAFT_0660 are separated by 123 nucleotides
EX28DRAFT_0657: EX28DRAFT_0657 - Universal stress protein UspA and related nucleotide-binding proteins, at 651,929 to 652,357
_0657
EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502
_0658
EX28DRAFT_0659: EX28DRAFT_0659 - Flagellar transcriptional activator (FlhC), at 653,505 to 654,083
_0659
EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094
_0660
Position (kb) 653
654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.197 kb on - strand, within EX28DRAFT_0657 at 652.220 kb on - strand, within EX28DRAFT_0657 at 652.221 kb on + strand, within EX28DRAFT_0657 at 652.221 kb on + strand, within EX28DRAFT_0657 at 652.222 kb on - strand, within EX28DRAFT_0657 at 652.222 kb on - strand, within EX28DRAFT_0657 at 652.222 kb on - strand, within EX28DRAFT_0657 at 652.442 kb on + strand at 652.474 kb on + strand at 652.641 kb on + strand at 652.643 kb on + strand at 652.691 kb on + strand at 652.692 kb on - strand at 652.775 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.909 kb on + strand at 652.910 kb on - strand at 652.910 kb on - strand at 652.910 kb on - strand at 652.958 kb on + strand at 652.962 kb on + strand at 652.962 kb on + strand at 652.987 kb on + strand at 652.988 kb on - strand at 652.988 kb on - strand at 653.015 kb on - strand at 653.029 kb on + strand at 653.030 kb on - strand at 653.030 kb on - strand at 653.047 kb on + strand at 653.048 kb on - strand at 653.055 kb on + strand at 653.055 kb on + strand at 653.124 kb on + strand at 653.127 kb on + strand at 653.127 kb on + strand at 653.127 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.157 kb on + strand at 653.158 kb on - strand at 653.158 kb on - strand at 653.158 kb on - strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.171 kb on + strand at 653.178 kb on + strand at 653.178 kb on + strand at 653.178 kb on + strand at 653.179 kb on - strand at 653.179 kb on - strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.182 kb on + strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.183 kb on - strand at 653.201 kb on - strand, within EX28DRAFT_0658 at 653.204 kb on + strand, within EX28DRAFT_0658 at 653.204 kb on + strand, within EX28DRAFT_0658 at 653.205 kb on - strand, within EX28DRAFT_0658 at 653.227 kb on - strand, within EX28DRAFT_0658 at 653.227 kb on - strand, within EX28DRAFT_0658 at 653.500 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.542 kb on + strand at 653.564 kb on + strand, within EX28DRAFT_0659 at 653.581 kb on + strand, within EX28DRAFT_0659 at 653.634 kb on + strand, within EX28DRAFT_0659 at 653.635 kb on - strand, within EX28DRAFT_0659 at 653.645 kb on - strand, within EX28DRAFT_0659 at 653.651 kb on + strand, within EX28DRAFT_0659 at 653.652 kb on - strand, within EX28DRAFT_0659 at 653.697 kb on - strand, within EX28DRAFT_0659 at 653.735 kb on + strand, within EX28DRAFT_0659 at 653.736 kb on - strand, within EX28DRAFT_0659 at 653.736 kb on - strand, within EX28DRAFT_0659 at 653.748 kb on + strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.749 kb on - strand, within EX28DRAFT_0659 at 653.800 kb on - strand, within EX28DRAFT_0659 at 653.808 kb on + strand, within EX28DRAFT_0659 at 653.809 kb on - strand, within EX28DRAFT_0659 at 653.809 kb on - strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.936 kb on + strand, within EX28DRAFT_0659 at 653.937 kb on - strand, within EX28DRAFT_0659 at 653.976 kb on - strand, within EX28DRAFT_0659 at 653.976 kb on - strand, within EX28DRAFT_0659 at 653.980 kb on + strand, within EX28DRAFT_0659 at 653.980 kb on + strand, within EX28DRAFT_0659 at 653.981 kb on - strand, within EX28DRAFT_0659 at 654.004 kb on + strand, within EX28DRAFT_0659 at 654.014 kb on + strand, within EX28DRAFT_0659 at 654.041 kb on + strand at 654.123 kb on + strand at 654.123 kb on + strand at 654.182 kb on + strand at 654.213 kb on - strand at 654.213 kb on - strand at 654.218 kb on - strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.220 kb on + strand at 654.221 kb on - strand at 654.221 kb on - strand at 654.232 kb on + strand at 654.232 kb on + strand at 654.258 kb on + strand at 654.291 kb on + strand at 654.292 kb on - strand at 654.292 kb on - strand at 654.308 kb on + strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.309 kb on - strand, within EX28DRAFT_0660 at 654.311 kb on + strand, within EX28DRAFT_0660 at 654.342 kb on - strand, within EX28DRAFT_0660 at 654.359 kb on + strand, within EX28DRAFT_0660 at 654.360 kb on - strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.414 kb on + strand, within EX28DRAFT_0660 at 654.425 kb on + strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.426 kb on - strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.429 kb on + strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.430 kb on - strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.431 kb on + strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660 at 654.432 kb on - strand, within EX28DRAFT_0660
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 652,197 - EX28DRAFT_0657 0.62 +1.3 652,220 - EX28DRAFT_0657 0.68 -0.1 652,221 + EX28DRAFT_0657 0.68 -0.8 652,221 + EX28DRAFT_0657 0.68 -0.4 652,222 - EX28DRAFT_0657 0.68 +0.2 652,222 - EX28DRAFT_0657 0.68 -0.5 652,222 - EX28DRAFT_0657 0.68 +0.3 652,442 + +0.4 652,474 + +0.8 652,641 + +0.5 652,643 + +0.2 652,691 + +0.2 652,692 - +0.4 652,775 + +0.5 652,909 + -0.1 652,909 + -1.1 652,909 + -0.2 652,909 + +0.1 652,909 + -1.0 652,909 + +0.8 652,910 - -0.1 652,910 - -0.1 652,910 - -0.2 652,958 + -0.6 652,962 + -0.5 652,962 + +0.1 652,987 + -0.0 652,988 - -1.2 652,988 - -0.1 653,015 - +0.1 653,029 + +0.1 653,030 - -0.9 653,030 - +1.6 653,047 + +2.2 653,048 - -0.6 653,055 + +0.6 653,055 + -0.2 653,124 + +0.4 653,127 + -0.1 653,127 + +0.2 653,127 + -0.1 653,157 + -0.5 653,157 + -0.1 653,157 + +0.8 653,157 + +0.2 653,157 + +0.3 653,157 + -0.2 653,157 + -1.6 653,157 + +0.2 653,157 + -0.1 653,157 + -0.6 653,157 + -1.3 653,158 - -0.7 653,158 - +0.3 653,158 - -0.3 653,171 + +0.0 653,171 + -0.1 653,171 + -0.7 653,171 + -0.7 653,178 + +1.2 653,178 + -0.4 653,178 + +0.1 653,179 - -0.5 653,179 - -0.2 653,182 + +0.1 653,182 + -0.2 653,182 + -0.3 653,182 + -0.1 653,182 + -0.1 653,182 + -0.1 653,182 + -0.2 653,182 + -0.3 653,183 - +0.5 653,183 - -0.0 653,183 - +0.4 653,183 - +0.0 653,201 - EX28DRAFT_0658 0.14 -0.7 653,204 + EX28DRAFT_0658 0.15 -0.6 653,204 + EX28DRAFT_0658 0.15 -0.1 653,205 - EX28DRAFT_0658 0.15 -0.6 653,227 - EX28DRAFT_0658 0.21 +0.1 653,227 - EX28DRAFT_0658 0.21 +0.7 653,500 + -0.1 653,542 + +0.1 653,542 + -1.0 653,542 + -0.6 653,542 + +0.9 653,542 + -0.2 653,542 + +1.3 653,564 + EX28DRAFT_0659 0.10 -1.5 653,581 + EX28DRAFT_0659 0.13 -0.3 653,634 + EX28DRAFT_0659 0.22 -1.2 653,635 - EX28DRAFT_0659 0.22 +0.4 653,645 - EX28DRAFT_0659 0.24 +0.3 653,651 + EX28DRAFT_0659 0.25 -0.3 653,652 - EX28DRAFT_0659 0.25 -0.1 653,697 - EX28DRAFT_0659 0.33 -0.2 653,735 + EX28DRAFT_0659 0.40 -1.4 653,736 - EX28DRAFT_0659 0.40 -0.2 653,736 - EX28DRAFT_0659 0.40 -0.8 653,748 + EX28DRAFT_0659 0.42 +0.3 653,749 - EX28DRAFT_0659 0.42 -0.3 653,749 - EX28DRAFT_0659 0.42 +0.4 653,749 - EX28DRAFT_0659 0.42 -0.5 653,749 - EX28DRAFT_0659 0.42 +0.1 653,749 - EX28DRAFT_0659 0.42 +0.0 653,800 - EX28DRAFT_0659 0.51 -0.4 653,808 + EX28DRAFT_0659 0.52 -0.4 653,809 - EX28DRAFT_0659 0.53 -0.3 653,809 - EX28DRAFT_0659 0.53 +0.0 653,936 + EX28DRAFT_0659 0.74 -1.2 653,936 + EX28DRAFT_0659 0.74 -1.0 653,936 + EX28DRAFT_0659 0.74 +0.9 653,937 - EX28DRAFT_0659 0.75 -1.3 653,976 - EX28DRAFT_0659 0.81 +1.1 653,976 - EX28DRAFT_0659 0.81 -0.3 653,980 + EX28DRAFT_0659 0.82 +0.3 653,980 + EX28DRAFT_0659 0.82 -0.9 653,981 - EX28DRAFT_0659 0.82 -1.5 654,004 + EX28DRAFT_0659 0.86 -0.1 654,014 + EX28DRAFT_0659 0.88 -0.4 654,041 + -0.0 654,123 + +0.3 654,123 + +0.3 654,182 + +0.1 654,213 - -0.4 654,213 - +0.0 654,218 - -1.8 654,220 + -0.3 654,220 + +0.3 654,220 + -0.0 654,221 - -1.1 654,221 - -0.3 654,232 + -0.3 654,232 + +0.3 654,258 + +0.1 654,291 + -0.2 654,292 - -0.0 654,292 - -1.7 654,308 + EX28DRAFT_0660 0.11 +0.1 654,309 - EX28DRAFT_0660 0.11 -1.8 654,309 - EX28DRAFT_0660 0.11 -0.4 654,311 + EX28DRAFT_0660 0.12 -1.1 654,342 - EX28DRAFT_0660 0.15 -0.8 654,359 + EX28DRAFT_0660 0.17 +1.0 654,360 - EX28DRAFT_0660 0.17 +0.2 654,414 + EX28DRAFT_0660 0.23 +0.1 654,414 + EX28DRAFT_0660 0.23 +0.4 654,425 + EX28DRAFT_0660 0.25 +2.0 654,426 - EX28DRAFT_0660 0.25 +0.4 654,426 - EX28DRAFT_0660 0.25 -0.6 654,426 - EX28DRAFT_0660 0.25 -0.3 654,426 - EX28DRAFT_0660 0.25 +1.6 654,426 - EX28DRAFT_0660 0.25 +0.0 654,429 + EX28DRAFT_0660 0.25 +0.3 654,429 + EX28DRAFT_0660 0.25 -0.1 654,429 + EX28DRAFT_0660 0.25 +0.4 654,429 + EX28DRAFT_0660 0.25 +0.6 654,430 - EX28DRAFT_0660 0.25 -0.7 654,430 - EX28DRAFT_0660 0.25 -0.7 654,430 - EX28DRAFT_0660 0.25 -0.6 654,430 - EX28DRAFT_0660 0.25 -0.0 654,431 + EX28DRAFT_0660 0.25 -0.7 654,431 + EX28DRAFT_0660 0.25 +0.8 654,432 - EX28DRAFT_0660 0.25 +0.3 654,432 - EX28DRAFT_0660 0.25 +0.5 654,432 - EX28DRAFT_0660 0.25 -0.6 654,432 - EX28DRAFT_0660 0.25 -0.7
Or see this region's nucleotide sequence