Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0652

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0651 and EX28DRAFT_0652 are separated by 787 nucleotidesEX28DRAFT_0652 and EX28DRAFT_0653 are separated by 71 nucleotides EX28DRAFT_0651: EX28DRAFT_0651 - Ferritin-like protein, at 644,667 to 645,170 _0651 EX28DRAFT_0652: EX28DRAFT_0652 - ABC-type sugar transport system, periplasmic component, at 645,958 to 646,947 _0652 EX28DRAFT_0653: EX28DRAFT_0653 - ABC-type sugar transport system, ATPase component, at 647,019 to 648,533 _0653 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1at 645.011 kb on + strand, within EX28DRAFT_0651at 645.091 kb on - strand, within EX28DRAFT_0651at 645.116 kb on - strand, within EX28DRAFT_0651at 645.170 kb on + strandat 645.171 kb on - strandat 645.176 kb on + strandat 645.305 kb on - strandat 645.308 kb on + strandat 645.309 kb on - strandat 645.315 kb on - strandat 645.359 kb on - strandat 645.363 kb on + strandat 645.382 kb on + strandat 645.396 kb on - strandat 645.606 kb on + strandat 645.606 kb on + strandat 645.695 kb on + strandat 645.749 kb on + strandat 645.749 kb on + strandat 645.771 kb on - strandat 645.970 kb on - strandat 646.212 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.391 kb on - strand, within EX28DRAFT_0652at 646.391 kb on - strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.535 kb on - strand, within EX28DRAFT_0652at 646.535 kb on - strand, within EX28DRAFT_0652at 646.591 kb on - strand, within EX28DRAFT_0652at 646.591 kb on - strand, within EX28DRAFT_0652at 646.771 kb on + strand, within EX28DRAFT_0652at 646.828 kb on + strand, within EX28DRAFT_0652at 646.866 kb on + strandat 646.945 kb on + strandat 646.945 kb on + strandat 646.946 kb on - strandat 646.949 kb on - strandat 646.949 kb on - strandat 646.949 kb on - strandat 646.991 kb on + strandat 646.991 kb on + strandat 646.992 kb on - strandat 647.037 kb on + strandat 647.109 kb on + strandat 647.110 kb on - strandat 647.187 kb on + strand, within EX28DRAFT_0653at 647.187 kb on + strand, within EX28DRAFT_0653at 647.188 kb on - strand, within EX28DRAFT_0653at 647.188 kb on - strand, within EX28DRAFT_0653at 647.195 kb on + strand, within EX28DRAFT_0653at 647.196 kb on - strand, within EX28DRAFT_0653at 647.328 kb on + strand, within EX28DRAFT_0653at 647.328 kb on + strand, within EX28DRAFT_0653at 647.329 kb on - strand, within EX28DRAFT_0653at 647.329 kb on - strand, within EX28DRAFT_0653at 647.333 kb on - strand, within EX28DRAFT_0653at 647.333 kb on - strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.382 kb on + strand, within EX28DRAFT_0653at 647.383 kb on - strand, within EX28DRAFT_0653at 647.402 kb on + strand, within EX28DRAFT_0653at 647.402 kb on + strand, within EX28DRAFT_0653at 647.635 kb on + strand, within EX28DRAFT_0653at 647.636 kb on - strand, within EX28DRAFT_0653at 647.636 kb on - strand, within EX28DRAFT_0653at 647.763 kb on + strand, within EX28DRAFT_0653at 647.764 kb on - strand, within EX28DRAFT_0653

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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645,011 + EX28DRAFT_0651 0.68 +0.4
645,091 - EX28DRAFT_0651 0.84 -0.0
645,116 - EX28DRAFT_0651 0.89 -2.7
645,170 + -0.3
645,171 - +0.3
645,176 + +1.1
645,305 - -0.3
645,308 + +0.9
645,309 - +0.2
645,315 - +0.0
645,359 - +0.6
645,363 + +0.1
645,382 + +0.6
645,396 - +0.0
645,606 + +0.2
645,606 + +0.5
645,695 + +0.2
645,749 + -0.1
645,749 + -0.2
645,771 - -1.3
645,970 - -0.2
646,212 + EX28DRAFT_0652 0.26 +0.1
646,390 + EX28DRAFT_0652 0.44 +1.2
646,390 + EX28DRAFT_0652 0.44 -0.3
646,390 + EX28DRAFT_0652 0.44 +0.3
646,391 - EX28DRAFT_0652 0.44 -0.5
646,391 - EX28DRAFT_0652 0.44 -1.1
646,534 + EX28DRAFT_0652 0.58 -0.0
646,534 + EX28DRAFT_0652 0.58 -0.1
646,534 + EX28DRAFT_0652 0.58 +0.4
646,535 - EX28DRAFT_0652 0.58 -2.6
646,535 - EX28DRAFT_0652 0.58 -1.8
646,591 - EX28DRAFT_0652 0.64 -0.1
646,591 - EX28DRAFT_0652 0.64 -1.2
646,771 + EX28DRAFT_0652 0.82 -0.9
646,828 + EX28DRAFT_0652 0.88 -0.4
646,866 + +1.1
646,945 + -0.8
646,945 + +0.1
646,946 - +0.2
646,949 - +1.2
646,949 - -0.1
646,949 - +0.1
646,991 + -0.9
646,991 + -0.3
646,992 - +0.1
647,037 + +0.8
647,109 + -2.3
647,110 - -0.2
647,187 + EX28DRAFT_0653 0.11 +0.2
647,187 + EX28DRAFT_0653 0.11 +1.4
647,188 - EX28DRAFT_0653 0.11 +0.2
647,188 - EX28DRAFT_0653 0.11 -0.2
647,195 + EX28DRAFT_0653 0.12 +1.1
647,196 - EX28DRAFT_0653 0.12 +0.1
647,328 + EX28DRAFT_0653 0.20 +0.0
647,328 + EX28DRAFT_0653 0.20 -1.0
647,329 - EX28DRAFT_0653 0.20 -0.4
647,329 - EX28DRAFT_0653 0.20 -0.1
647,333 - EX28DRAFT_0653 0.21 -1.8
647,333 - EX28DRAFT_0653 0.21 -0.8
647,378 + EX28DRAFT_0653 0.24 -2.1
647,378 + EX28DRAFT_0653 0.24 +0.9
647,378 + EX28DRAFT_0653 0.24 -0.0
647,378 + EX28DRAFT_0653 0.24 -1.1
647,379 - EX28DRAFT_0653 0.24 +0.3
647,379 - EX28DRAFT_0653 0.24 +0.5
647,379 - EX28DRAFT_0653 0.24 +0.1
647,382 + EX28DRAFT_0653 0.24 -0.3
647,383 - EX28DRAFT_0653 0.24 +0.7
647,402 + EX28DRAFT_0653 0.25 -0.7
647,402 + EX28DRAFT_0653 0.25 -0.2
647,635 + EX28DRAFT_0653 0.41 -0.9
647,636 - EX28DRAFT_0653 0.41 +0.3
647,636 - EX28DRAFT_0653 0.41 +0.5
647,763 + EX28DRAFT_0653 0.49 -0.2
647,764 - EX28DRAFT_0653 0.49 +0.6

Or see this region's nucleotide sequence