Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0645

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0644 and EX28DRAFT_0645 are separated by 33 nucleotidesEX28DRAFT_0645 and EX28DRAFT_0646 are separated by 228 nucleotidesEX28DRAFT_0646 and EX28DRAFT_0647 are separated by 36 nucleotides EX28DRAFT_0644: EX28DRAFT_0644 - yecA family protein, at 638,455 to 639,123 _0644 EX28DRAFT_0645: EX28DRAFT_0645 - aromatic amino acid transport protein, at 639,157 to 640,368 _0645 EX28DRAFT_0646: EX28DRAFT_0646 - hypothetical protein, at 640,597 to 640,938 _0646 EX28DRAFT_0647: EX28DRAFT_0647 - Ferritin-like protein, at 640,975 to 641,472 _0647 Position (kb) 639 640 641Strain fitness (log2 ratio) -1 0 1 2at 638.159 kb on - strandat 638.159 kb on - strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.338 kb on + strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.415 kb on - strandat 638.415 kb on - strandat 638.448 kb on - strandat 638.515 kb on + strandat 638.642 kb on - strand, within EX28DRAFT_0644at 638.642 kb on - strand, within EX28DRAFT_0644at 638.698 kb on - strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.767 kb on - strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.789 kb on - strand, within EX28DRAFT_0644at 638.813 kb on - strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.990 kb on + strand, within EX28DRAFT_0644at 638.992 kb on + strand, within EX28DRAFT_0644at 639.103 kb on - strandat 639.103 kb on - strandat 639.124 kb on + strandat 639.155 kb on - strandat 639.159 kb on - strandat 639.208 kb on - strandat 639.480 kb on - strand, within EX28DRAFT_0645at 639.570 kb on + strand, within EX28DRAFT_0645at 639.750 kb on + strand, within EX28DRAFT_0645at 639.763 kb on - strand, within EX28DRAFT_0645at 639.862 kb on - strand, within EX28DRAFT_0645at 639.862 kb on - strand, within EX28DRAFT_0645at 640.076 kb on + strand, within EX28DRAFT_0645at 640.094 kb on + strand, within EX28DRAFT_0645at 640.114 kb on - strand, within EX28DRAFT_0645at 640.149 kb on - strand, within EX28DRAFT_0645at 640.149 kb on - strand, within EX28DRAFT_0645at 640.197 kb on - strand, within EX28DRAFT_0645at 640.223 kb on + strand, within EX28DRAFT_0645at 640.470 kb on - strandat 640.514 kb on + strandat 640.515 kb on - strandat 640.830 kb on + strand, within EX28DRAFT_0646at 640.831 kb on - strand, within EX28DRAFT_0646at 640.937 kb on - strandat 640.976 kb on + strandat 641.007 kb on + strandat 641.290 kb on - strand, within EX28DRAFT_0647

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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638,159 - +0.1
638,159 - +2.1
638,260 + -1.2
638,260 + +0.3
638,260 + +2.2
638,338 + +0.1
638,339 - +0.5
638,339 - +0.9
638,339 - -0.7
638,414 + -0.0
638,414 + +0.3
638,414 + +0.1
638,415 - +1.6
638,415 - -0.1
638,448 - -1.0
638,515 + +0.1
638,642 - EX28DRAFT_0644 0.28 -0.6
638,642 - EX28DRAFT_0644 0.28 -0.5
638,698 - EX28DRAFT_0644 0.36 -0.1
638,703 + EX28DRAFT_0644 0.37 -0.3
638,703 + EX28DRAFT_0644 0.37 -0.6
638,767 - EX28DRAFT_0644 0.47 -0.6
638,788 + EX28DRAFT_0644 0.50 -1.1
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 -0.3
638,788 + EX28DRAFT_0644 0.50 -0.8
638,788 + EX28DRAFT_0644 0.50 +0.4
638,788 + EX28DRAFT_0644 0.50 +1.0
638,788 + EX28DRAFT_0644 0.50 +0.2
638,788 + EX28DRAFT_0644 0.50 +0.9
638,788 + EX28DRAFT_0644 0.50 +0.1
638,788 + EX28DRAFT_0644 0.50 -0.5
638,789 - EX28DRAFT_0644 0.50 -0.5
638,813 - EX28DRAFT_0644 0.54 -0.1
638,885 + EX28DRAFT_0644 0.64 +0.5
638,885 + EX28DRAFT_0644 0.64 -0.1
638,947 + EX28DRAFT_0644 0.74 -0.3
638,947 + EX28DRAFT_0644 0.74 +1.8
638,947 + EX28DRAFT_0644 0.74 +0.1
638,947 + EX28DRAFT_0644 0.74 -0.3
638,948 - EX28DRAFT_0644 0.74 -0.2
638,948 - EX28DRAFT_0644 0.74 -0.1
638,948 - EX28DRAFT_0644 0.74 +0.5
638,990 + EX28DRAFT_0644 0.80 +0.4
638,992 + EX28DRAFT_0644 0.80 -0.7
639,103 - -0.6
639,103 - -0.1
639,124 + -0.2
639,155 - +0.5
639,159 - +0.9
639,208 - +0.5
639,480 - EX28DRAFT_0645 0.27 -0.4
639,570 + EX28DRAFT_0645 0.34 -0.7
639,750 + EX28DRAFT_0645 0.49 -0.0
639,763 - EX28DRAFT_0645 0.50 -0.9
639,862 - EX28DRAFT_0645 0.58 +0.4
639,862 - EX28DRAFT_0645 0.58 -1.4
640,076 + EX28DRAFT_0645 0.76 -0.1
640,094 + EX28DRAFT_0645 0.77 -0.8
640,114 - EX28DRAFT_0645 0.79 -0.3
640,149 - EX28DRAFT_0645 0.82 -0.2
640,149 - EX28DRAFT_0645 0.82 -0.6
640,197 - EX28DRAFT_0645 0.86 +0.0
640,223 + EX28DRAFT_0645 0.88 +0.6
640,470 - -0.9
640,514 + -0.9
640,515 - -0.8
640,830 + EX28DRAFT_0646 0.68 -0.1
640,831 - EX28DRAFT_0646 0.68 +0.8
640,937 - -0.6
640,976 + -1.0
641,007 + -1.1
641,290 - EX28DRAFT_0647 0.63 -0.3

Or see this region's nucleotide sequence